NONHSAT130386
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT130386 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2024 nt |
Genomic location |
chr9-:21454267..21559832 |
Exon number |
4 |
Exons |
21454267..21455943,21476898..21477034,21477168..21477291,21559747..21559832 |
Genome context |
|
Sequence |
000001 GCAGGTGTGG ATGGGGCGAA GGTGCGGGAA CGTCCACTCC CGCGCGCCCC TCTCGGGGAC CAGGGCGGCC TCCCAGGAGG 000080
000081 AGCTTGGTTT CTGGTCCTCA TACCGTGTGG TTGAGTGAAA TCAAAACTTC CACGATAGCA ATGCTGATTG GACAAAGAAT 000160 000161 GTGTTGTGGA CACAAAACCA AACTCTGGAG GACAGAGGAT TCATTCCAAG GGTCTGCTTG TATTCAATGA CTGGTCTACG 000240 000241 TGGGGGTGTG AAGTCCCCTT ACTCCACCTG TGAAGAGTCT TCCCAGTTTC AGACCACCCT CCCAGCCTCC TGTTATTGGC 000320 000321 TAAGGCCATT TTGTGACTAC ACTGCAGGTA GAGATGGATT CCTGGAAATA CCTCCTCAAG GCCAGTGTAG AGCCCTCAAT 000400 000401 CACCCACTGC CCCCAGCTTC TCCTTCTCCC ATCTCCTGCA CCAAGCAGGT CTCCAGGTGT TCCAGCTGCT GATGACGTAA 000480 000481 AGTGTGGAGT TGGTCCAGGA AGGTCATGTT CCATGCAGCA GAGGAGCGCT TTGTGTGAGA AGTTGAAGAC CTGCTGTAAC 000560 000561 ACATCATAGA GGAAAGACAT AGCCTGGGCC TTCTGCAACT GGCTGACTTC CACCTTCTCC TGGGGGAATC TGAAGTCACT 000640 000641 TCTGTCCTTT AGACACAAGA AGGGAGAGAT TCTCCTCATT TGGCCCAAAA GCACCAAGGT GTTCCTGCCT AGCAGGCCAT 000720 000721 GGTTCTGAGG CAGGTTATAT CCTAGAGATC CAGAAGAGCC ACAGCTGCAC ACCTCTAGGG CTGCCAGTAG AGGGAAGAGG 000800 000801 AGGGCCATTG AGAAATCAGG ATGCTTTTGG CCTGGTTGAG CTGAGGTCTT CATAGAACCT TGGATCCTAG GTTCTATGAA 000880 000881 GACATTCTAT CTATGCATGG CTTTAATGGA GCACAAATAG TTTTCATTTT TCTGAGCATT TCTCTAAATT TTTAATTCCA 000960 000961 TTTATTGTTT TCATTTACAT GTCTTCTATA TCAGCATCCA CAACCTTTTG GCCACCAGTT TGGTGGAAGA TAATTTTTCC 001040 001041 ACGAAAAATG GGGTCAGGGA GGGAATGCTT TCAGAGGCAT TAGATTCTCA TTAGGAGACC ACAACCTAGA TCCTTCGCAT 001120 001121 CTGCACTTCA CAATAGGGTT CCTGCTCTTT TGAGAATCCA ATGCCACTGC TGATCTGACA GGAGGCAGAG CTCAGGCGTT 001200 001201 AATGCTTGTT GGTTGGCCTG CTTGCCTCCT GCTGTGCGGC CCTGTTCCTA CCAGGCCAGG ACCAGTACCC CGGTCCATGG 001280 001281 ATGGGGGTTG AAAAACCTTG TTCTATATGA CCTAAAAGGA GGTCATCACT CTACACTCTT GATTTTTGCA ATGGATGTTC 001360 001361 AATATTCCCA GTAAACTTAA GATATATCAA TCCAAATGAA TATTGATCAA TCAGATGAGA AACATCTTTG TGCTACTGTT 001440 001441 AGAAGTATAT ACTTTTAGCC CAGATCCTAG CCTCCAGTTT TACCCTCCAT TTTGCATAGG AAATCAGGAT CCCTGGGCCC 001520 001521 TATGGGTTTC TGTATTCAGT TAGGAAATTA CCTATCTCTG GAAATTAAAC TTTTTAGGAC TATCTTTGTT TGATATTTGA 001600 001601 TTCACAGAAG ACGTTGATGG TTATTAGTGA AAGAACTTCT CTGGTGCTTC CCTCCTTCTA GAATATATTC ATTCAGGTTC 001680 001681 ATGTGGTTAT GCTTCCCTGG GGGCTCAAGC TTAGATCAAT GAACATTGCC TTTTTTGCAT TATTTTCTTA CTGGAGAAAT 001760 001761 ATAGCACTCC TCAGGCTGCG CCAATACCCC TAAAAGAAAT TCTGTTGGTT TGTTTTTTTT TCTTTTTTAA GATGCATATG 001840 001841 GGTGTGGAAA TTTTAATCTT AAAATAATGT TATTTCCTCA GCAGTGATGA TTCACAAGGT ATTTATCACA TCAAGTCACT 001920 001921 CCCTAAATGC AGGCTCACCA CATCCTGATG ACTTTAGAAC TCCTTTTCCA GGGAGGTTCT TGCTTCTTTG TTGCCAAAAC 002000 002001 AATAAATCCT TTGTGACCTT TGTC |
Predicted Small Protein
Name | NONHSAT130386_smProtein_353:568 |
Length | 72 |
Molecular weight | 7546.7295 |
Aromaticity | 0.0281690140845 |
Instability index | 74.7295774648 |
Isoelectric point | 8.62554931641 |
Runs | 7 |
Runs residual | 0.0499629355078 |
Runs probability | 0.0330330330331 |
Amino acid sequence | MDSWKYLLKASVEPSITHCPQLLLLPSPAPSRSPGVPAADDVKCGVGPGRSCSMQQRSAL CEKLKTCCNTS |
Secondary structure | LLHHHHHHHHLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHH HHHHHHHLLLL |
PRMN | - |
PiMo | - |