NONHSAT130386

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT130386

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2024 nt

Genomic location

chr9-:21454267..21559832

Exon number

4

Exons

21454267..21455943,21476898..21477034,21477168..21477291,21559747..21559832

Genome context

Sequence
000001 GCAGGTGTGG ATGGGGCGAA GGTGCGGGAA CGTCCACTCC CGCGCGCCCC TCTCGGGGAC CAGGGCGGCC TCCCAGGAGG 000080
000081 AGCTTGGTTT CTGGTCCTCA TACCGTGTGG TTGAGTGAAA TCAAAACTTC CACGATAGCA ATGCTGATTG GACAAAGAAT 000160
000161 GTGTTGTGGA CACAAAACCA AACTCTGGAG GACAGAGGAT TCATTCCAAG GGTCTGCTTG TATTCAATGA CTGGTCTACG 000240
000241 TGGGGGTGTG AAGTCCCCTT ACTCCACCTG TGAAGAGTCT TCCCAGTTTC AGACCACCCT CCCAGCCTCC TGTTATTGGC 000320
000321 TAAGGCCATT TTGTGACTAC ACTGCAGGTA GAGATGGATT CCTGGAAATA CCTCCTCAAG GCCAGTGTAG AGCCCTCAAT 000400
000401 CACCCACTGC CCCCAGCTTC TCCTTCTCCC ATCTCCTGCA CCAAGCAGGT CTCCAGGTGT TCCAGCTGCT GATGACGTAA 000480
000481 AGTGTGGAGT TGGTCCAGGA AGGTCATGTT CCATGCAGCA GAGGAGCGCT TTGTGTGAGA AGTTGAAGAC CTGCTGTAAC 000560
000561 ACATCATAGA GGAAAGACAT AGCCTGGGCC TTCTGCAACT GGCTGACTTC CACCTTCTCC TGGGGGAATC TGAAGTCACT 000640
000641 TCTGTCCTTT AGACACAAGA AGGGAGAGAT TCTCCTCATT TGGCCCAAAA GCACCAAGGT GTTCCTGCCT AGCAGGCCAT 000720
000721 GGTTCTGAGG CAGGTTATAT CCTAGAGATC CAGAAGAGCC ACAGCTGCAC ACCTCTAGGG CTGCCAGTAG AGGGAAGAGG 000800
000801 AGGGCCATTG AGAAATCAGG ATGCTTTTGG CCTGGTTGAG CTGAGGTCTT CATAGAACCT TGGATCCTAG GTTCTATGAA 000880
000881 GACATTCTAT CTATGCATGG CTTTAATGGA GCACAAATAG TTTTCATTTT TCTGAGCATT TCTCTAAATT TTTAATTCCA 000960
000961 TTTATTGTTT TCATTTACAT GTCTTCTATA TCAGCATCCA CAACCTTTTG GCCACCAGTT TGGTGGAAGA TAATTTTTCC 001040
001041 ACGAAAAATG GGGTCAGGGA GGGAATGCTT TCAGAGGCAT TAGATTCTCA TTAGGAGACC ACAACCTAGA TCCTTCGCAT 001120
001121 CTGCACTTCA CAATAGGGTT CCTGCTCTTT TGAGAATCCA ATGCCACTGC TGATCTGACA GGAGGCAGAG CTCAGGCGTT 001200
001201 AATGCTTGTT GGTTGGCCTG CTTGCCTCCT GCTGTGCGGC CCTGTTCCTA CCAGGCCAGG ACCAGTACCC CGGTCCATGG 001280
001281 ATGGGGGTTG AAAAACCTTG TTCTATATGA CCTAAAAGGA GGTCATCACT CTACACTCTT GATTTTTGCA ATGGATGTTC 001360
001361 AATATTCCCA GTAAACTTAA GATATATCAA TCCAAATGAA TATTGATCAA TCAGATGAGA AACATCTTTG TGCTACTGTT 001440
001441 AGAAGTATAT ACTTTTAGCC CAGATCCTAG CCTCCAGTTT TACCCTCCAT TTTGCATAGG AAATCAGGAT CCCTGGGCCC 001520
001521 TATGGGTTTC TGTATTCAGT TAGGAAATTA CCTATCTCTG GAAATTAAAC TTTTTAGGAC TATCTTTGTT TGATATTTGA 001600
001601 TTCACAGAAG ACGTTGATGG TTATTAGTGA AAGAACTTCT CTGGTGCTTC CCTCCTTCTA GAATATATTC ATTCAGGTTC 001680
001681 ATGTGGTTAT GCTTCCCTGG GGGCTCAAGC TTAGATCAAT GAACATTGCC TTTTTTGCAT TATTTTCTTA CTGGAGAAAT 001760
001761 ATAGCACTCC TCAGGCTGCG CCAATACCCC TAAAAGAAAT TCTGTTGGTT TGTTTTTTTT TCTTTTTTAA GATGCATATG 001840
001841 GGTGTGGAAA TTTTAATCTT AAAATAATGT TATTTCCTCA GCAGTGATGA TTCACAAGGT ATTTATCACA TCAAGTCACT 001920
001921 CCCTAAATGC AGGCTCACCA CATCCTGATG ACTTTAGAAC TCCTTTTCCA GGGAGGTTCT TGCTTCTTTG TTGCCAAAAC 002000
002001 AATAAATCCT TTGTGACCTT TGTC
[back to top]

Predicted Small Protein

Name NONHSAT130386_smProtein_353:568
Length 72
Molecular weight 7546.7295
Aromaticity 0.0281690140845
Instability index 74.7295774648
Isoelectric point 8.62554931641
Runs 7
Runs residual 0.0499629355078
Runs probability 0.0330330330331
Amino acid sequence MDSWKYLLKASVEPSITHCPQLLLLPSPAPSRSPGVPAADDVKCGVGPGRSCSMQQRSAL
CEKLKTCCNTS
Secondary structure LLHHHHHHHHLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHH
HHHHHHHLLLL
PRMN -
PiMo -