NONHSAT129048

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT129048

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1900 nt

Genomic location

chr8+:128806779..129113498

Exon number

9

Exons

128806779..128806980,128867401..128867565,128902835..128903244,128951754..128951922,128996150..128996450,129001408..129001537,129082406..129082518,129108764..129108900,129113226..129113498

Genome context

Sequence
000001 CTCCGGGCAG AGCGCGTGTG GCGGCCGAGC ACATGGGCCC GCGGGCCGGG CGGGCTCGGG GCGGCCGGGA CGAGGAGGGG 000080
000081 CGACGACGAG CTGCGAGCAA AGATGTGCCC CGGGACCCCC GGCACCTTCC AGTGGATTTC CTTGCGGAAA GGATGTTGGC 000160
000161 GGTCCCTGTG ACCTGTGGAG ACACGGCCAG ATCTGCCCTC CAGACCATAG CTGTCTGCAG TGCAGGAAGC CAACTATTAA 000240
000241 GGGGAAACAA AAGTGTTCTT AGGAGTCCTG CTGTCACTGT GGATTGAGCC GGTGAAGCCC TGAGGGATTT CATCGCTGAG 000320
000321 GTGGATGGAG AAGCAGCTGG GGGCCTTGGC TGTAAGGACC CCTAAGGGCC TGATCTTTTG GCCAGAAGGA GATTAAAAAG 000400
000401 ATGCCCCTCA AGATGGCTGT GCCTGTCAGC TGCATGGAGC TTCGTTCAAG TATTTTCTGA GCCTGATGGA TTTACAGTGA 000480
000481 TCTTCAGTGG TCTGGGGAAT AACGCTGGTG GAACCATGCA CTGGAATGAC ACACGCCCGG CACATTTCAG GATACTAAAA 000560
000561 GTGGTTTTAA GGGAGGCTGT GGCTGAATGC CTCATGGATT CTTACAGCTT GGATGTCCAT GGGGGACGAA GGACTGCAGC 000640
000641 TGGCTGAGAG GGTTGAGATC TCTGTTTACT TAGATCTCTG CCAACTTCCT TTGGGTCTCC CTATGGAATG TAAGACCCCG 000720
000721 ACTCTTCCTG GTGAAGCATC TGATGCACGT TCCATCCGGC GCTCAGCTGG GCTTGAGCTG ACCATACTCC CTGGAGCCTT 000800
000801 CTCCCGAGGT GCGCGGGTGA CCTTGGCACA TACAGCCATC ATGATGGTAC TTTAAGTGGA GGCTGAATCA TCTCCCCTTT 000880
000881 GAGCTGCTTG GCACGTGGCT CCCTTGGTGT TCCCCTTTTA CTGCCAGGAC ACTGAGATTT GGAGAGAGTC TCACTCTGTG 000960
000961 GTCCAGGCTG AAGTACAGTG GCATGATCCC AGGTCACTGC AACCCCCACC TCCCGGGTTC AAGTGATCCT CCTGCCTCAG 001040
001041 CCTCCCGAGT AGCTGGTATT ACAGGCGTGT GCCACAAAGC CTGGCTAAGT TTTGTATTTT TAGTAGAGAC GGGGTTTCAC 001120
001121 CATGTTGGCC AGGTTGGTCT CGAACTCCTG ACCTCAAGTG ATCCACTCAC TTTGGCCTTT CAACGTGCTG GGATTACAGG 001200
001201 CGAGAGTCAC CGCACCCGGA CGACTCTGAC ATTTTTGAAG AGTCCAGAAT CCTGTTACAC CTGGGATTTA GGCACTTTCA 001280
001281 ATCTGAAAAA ATACATATCC TTTCAGCACT CTGGACGGAC TTGAGAACTG TCCTTACGTG ACCTAAAGCT GGAGTATTTT 001360
001361 GAGATTGGAG AATTAAGAGC CAGTCTTGGT GCTCTGTGTT CACCTGGTTC ATCTGAGGAG CTGCATCTAC CCTGCCCATG 001440
001441 CCATAGATCC TGCCCTGTTT GCTTCTCCTG TTGCTGCTAG TGGACATGAG AAGGACAGAA TAACGGGCTC CCAGATTCAC 001520
001521 AAGCCCCACC AAGAGGATCA CCCCAGGAAC GCTTGGAGGC TGAGGAGTTC ACTGAGGCTA CTGCATCTTG AGACTCAGGA 001600
001601 TGAAGACCCA GCTTGGGGCT GTCAAAGGTT TTTTGCATGT CTGACACCCA TGACTCCACC TGGACCTTAT GGCTCCACCC 001680
001681 AGAAGCAATT CAGCCCAACA GGAGGACAGC TTCAACCCAT TACGATTTCA TCTCTGCCCC AACCACTCAG CAGCAAGCAC 001760
001761 CTGTTACCTG TCCACCCCCA CCCCTTCCCC CAAACTGCCT TTGAAAAATC CCTAACCTAT GAGCTTTGAA TAAGATGAGT 001840
001841 ACGAACTTCA TCGCCCACGT GGCGTGGCCG GCCTCGTGTC TATTAAATTC TTTTTCTACT
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Predicted Small Protein

Name NONHSAT129048_smProtein_32:286
Length 85
Molecular weight 8952.139
Aromaticity 0.0119047619048
Instability index 60.1785714286
Isoelectric point 11.0068969727
Runs 14
Runs residual 0.0326812253564
Runs probability 0.0495243142302
Amino acid sequence MGPRAGRARGGRDEEGRRRAASKDVPRDPRHLPVDFLAERMLAVPVTCGDTARSALQTIA
VCSAGSQLLRGNKSVLRSPAVTVD
Secondary structure LLLLLLLLLLLLLHHHHHHHHHLLLLLLLLLLLHHHHHHHHHLLLLLLLLHHHHHHHHHH
EEELLLEEELLLLEEEELLLEEEL
PRMN -
PiMo -