NONHSAT128939
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128939 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2523 nt |
Genomic location |
chr8+:125955738..125963329 |
Exon number |
2 |
Exons |
125955738..125957988,125963058..125963329 |
Genome context |
|
Sequence |
000001 GAAAGAGTGA GTTAAATGTT GGTAGGTGAT ATAGAGATAG TAATTAGGCA ATATAATTCG ATGTTGTTGA AAGAGCTGAG 000080
000081 CTATGAAATG CATTGTGATA AAGGGGCTGC CTGTGTAAGT AAATGGGTAT AATGAGGTGT AAAACTCCCT TTCTCTCTCT 000160 000161 CTTTCTGCTT CATAAGCCTT TCTGCTTCTC AAGTCCAGAC CTGCTGTTTT TGGGGTTTCC TTCCAATTTT TTTGCTGCTT 000240 000241 CCCTGGGGCC TTGGCTCTTG GGCCTGCTGC CTCTTCCCAC TCTACACCTT TGGATTCCTT ATCTTTGGCT CCACCTTATT 000320 000321 GCTCCATTCT CCAAAGACAA ATCCACAAGG CATAGGATTT TACAGAATAT GGGGTTACAG AAACAGCATA GGGAAGTGTA 000400 000401 AAAGCCTAGA AGCTTCTTAC AGACGCAGCC CCTTGTCTGT AGCTCCTGAC TCCCACTTAA ATGTCTGTTG GAAGCACCCT 000480 000481 GGGGTAGCAG AACCCAGCTC AGAAGATGGG GCTTATCCAC CATGCCTTTT CCTAACCTGA CACCcaccca gataatcttt 000560 000561 tcaatatgca aactagagcg tatcaccccc tgctcagagc ctttctgtga cctcccattt tgcttcccag gactccttgc 000640 000641 tccttagcca ggtctccagg tcctccgtga tcaggtctct gctcttctgc agcctcatct ctgccattct tcaccttttg 000720 000721 tgctccaacc caatctggtt ttcttctcat gctttgaaca ccccaagtct gtctgcttca ggagcttcgt actggctaat 000800 000801 cattcaccac agcatactcc catctatacg gctggctctt atattatggg tctcagctaa aatgtcatcc cttcaaagag 000880 000881 accttcttgg accacccccg ccattctcta tcctatttct ctcttttatt ttctttgaag cacttaccca ctttcagaaa 000960 000961 ctatctggct tgctcatgtg tttgtctcta gattgtctac ttcccctcct agactgtact ctccacaaga gagcaaagct 001040 001041 gtgtctgttg cattcactgt tgtcttccca gAAGCAAGCA GCATGCTGGA GACCCTCAAA TACATGTGAA ATGAAGGGAC 001120 001121 ACCTTGTGTT ATTTCACCTG TTTCCACCTG GTTCCCAAGT GGCAAGCTTG CATTGAGGTT ACAAAGTGGC AAAGCTGGGA 001200 001201 TATCACATGA TGTCACCATG ATGCTATATG AAATGTAACA TTAATTGAGT ACCTATGTGA CCAGTTCTTT AATTCTGTAA 001280 001281 GTGaactctc aaaaaaccct aggtaagtat tatcaactcg aactttaacg gatgaggaaa ctggaatttt ttaaaaaatg 001360 001361 acttaaccaa acatcacaga gctgtaaacc aggatttgaa TGGGTGAGCT GCACTCAGCC TTCATCTCAA GTCAGTTTGC 001440 001441 CTCTTTCTCC AAGAAGCCAC AGTTGATCCT GACCACATCA CATATGAGTT GCCTGGATTG CAGTCATTCA TTCACTAAGC 001520 001521 ATCTTTTAGG AGGTCACATG CCAGGCACCG TGTTAGGTAA TGATTTCTCC AAGTCACAGG AGCCGTGGTT CTGACTTTAG 001600 001601 AAAGTTTCTC ATCTGATGGG AGGGCAGGCA AGTAAATCAG TAAGGGTGGT CCCTGTCGGG ACACTGGTTG AGAAATACCC 001680 001681 AGGAACACTC TGATTGAGAA ATACCCAAAG TGCAAAGTGA CAGGGACTAG AGGCATCTCC ACTGGACCAG AGAGCTCTGG 001760 001761 ATTCGTCTTG AGCTAAGTCT CTGGAGGTAG GTGTCAGCTA CAAGGAGAAA AGCTGTATAT TTTGAGATAT GGGATGCAGG 001840 001841 GCCTTTTAGT TCCATAAATA AGAGAACTAT GGTGTGAATA CCACATGCCC TGGGCTGAAC TAagtgggct ctaggggaag 001920 001921 gtatactggg cagggagttt ggagaactgg tttctgtcta atccttctct aactctgtga ccttgaatgc atcatttccc 002000 002001 ctctgagtct cagattctct ttctgGCTGG CATTTAATGA AACCTAAATA TTCTAGACCT TCTACTTGTT CCATAAGTGC 002080 002081 TCAGTCCTAC ACTCACTCTC CTCTGGCACC AATATACTGA TTACTCATTT TATGCCCAGC AGAGCACTGC GTGTTTTGAA 002160 002161 ATATACAAAT AGTGGGAAAC GAAATCTTTG TTCTGGATGC AGTTATAATT TGGAAAGCGA GGAAATAAAT TATAACAAGG 002240 002241 GGAAAAAACA Gaatactact aaagtcatgc cgtgtgactt ctgaagctag ctcctaagaa gtccttgcag cttctgcctg 002320 002321 cgactcttag aacacttgct ttgaaggatg ccagatgctg tcttaaaagt ctgagcactc tgaaaccatc atgctgtgag 002400 002401 gaagcccaag ctaaccacat ggGCAAAAAA GATGCCCTCT GACTGCCACC ATTTGAGACA CTCTAATTAA GAACTGCCTC 002480 002481 ATTGAGCCCA TGAGGCCCTG TGAATGATAA TAATAAATTG TTT |
Predicted Small Protein
Name | NONHSAT128939_smProtein_122:400 |
Length | 93 |
Molecular weight | 10687.7318 |
Aromaticity | 0.141304347826 |
Instability index | 51.1923913043 |
Isoelectric point | 10.0366821289 |
Runs | 18 |
Runs residual | 0.0604472943384 |
Runs probability | 0.0520324245815 |
Amino acid sequence | MGIMRCKTPFLSLFLLHKPFCFSSPDLLFLGFPSNFFAASLGPWLLGLLPLPTLHLWIPY LWLHLIAPFSKDKSTRHRILQNMGLQKQHREV |
Secondary structure | LLLEEELLLLLLHHHHLLLLLLLLLLHHHLLLLLHHHHHHHLHHHHHLLLLLLLEEHHHH HHHHHHLLLLLLLLHHHHHHHHLLLLHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTT TTTiiiiiiiiiiiiiiiiiiiiiiiiiiiii |