NONHSAT128589
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128589 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
2016 nt |
Genomic location |
chr8-:125500751..125520756 |
Exon number |
4 |
Exons |
125500751..125500937,125506074..125507783,125516512..125516588,125520715..125520756 |
Genome context |
|
Sequence |
000001 GACATAATGA AAAGAAATAG AGATCGGTGT GTAGGGGGAG TGGTGCATTC ATTTGATGGT ACCAAGGAAG CAGCAGCTGC 000080
000081 TTTGATTGAC TTGGATCTTT ATATAGGATT TAATGGTTGC TCACTGAAAA CTGAAGCTAA TTTGGAAGTT TTGAAGTCAA 000160 000161 TTCCTAGTGA AAAATTAATG ATTGAGACAG GTAAGTTTGT TTTCAGAACT TTGTTTCATA TTAAACCATA CCAAACAAAA 000240 000241 AGGAAAGCTG GAGAAAGAAA TTTGACTTCA AACTTTAAGT GAACAAGTAT TTTAAAACAG CATGCTCAAC CTCAACAATT 000320 000321 ATGTTTTCCA GAAGATCTTT GGGGGTTATT AATGGAAAAA CATATGCAAA TGATTTTTTT CAATTTAGAA GTTTGCTATG 000400 000401 TCTAAGCACT TAGAAAATGA GATGCCAGAA TATAACTCAG GAGGTTGTAG TTACGAGTAC TTAGCTAAAC AAGGGGTCTT 000480 000481 GACTAAGCAC ATCACACTTC CAAGTTTCAA AATCTGTTCA GAATTTTGTT TACACAGTGT CTTTATAATG GCTTAATTCT 000560 000561 ACAGCACTTT GTACAGTGCA ACAATTTATA TTGGTTTAGT ATAAGAATTT TAGAATCCGT TGCCTCTTAA AACAAGGTGA 000640 000641 ggccgggcgc ggtggctcac gcctgtattc ccagcacttt gggaggccga ggtgggcgga tcacctgagg tcagaagttc 000720 000721 aagaccaacc tgaccaacat ggagaaacca catctctact aaaaatacaa agttatctgg gcatggtggc acatgcctgt 000800 000801 aatcctagct acttaggagg ctgtggcagg agaattgctt gaacccagga ggcagaggtt gctgtgagcc aagatcacgc 000880 000881 cattgcactc cagcctgggc aacaagggcg aaactcagtc tcaaaaaaaa aaaaaaaata caaaaaatta gctgggtgtg 000960 000961 gtggtggcac ttgcctgtag tcccagctac tcaggagcct gaggcacgag aattgtttga acccgggagg cagaggttgc 001040 001041 agtgagccga gattgtgcta ctgtactcca gccttggaga cagagtgaga ctccgtctca aaaaaaTAAT AAGGTGAAAA 001120 001121 GCTAAAACTT TTATCTAAAC CCTGTCAAGG CTCTCCTTAT ACCATGGACT TTAGGAAAGT CAAGACTGAG CCATTCTGGA 001200 001201 GAAATCACAT TCATTTCCTT GGGCAGTCAG GAAAACAAAA TATTTGATTA AAAGTACGAT GTTTGCAAAA TGTGTAATTC 001280 001281 TTTATTAAAA AATATTCAAA ACCAGTTTCA CATTCAGTAG AGATAGAAAT TTGTTTAACT TATGCAAACC TCACTACATG 001360 001361 CATAGCGAAA AAGATTTTGA AAACTGAAAA AAAAACTGTT TAACTTAAAT GTTTTCATGT TGTTATACAA TTGTATTTAA 001440 001441 GGTTTAGGTC TTTTTTTTAA AGCATGCTGC ACACCAACAA TGTTAGCAGA AAAAAGGAAT AGAAGTGAGT CTTAGAAGGT 001520 001521 ATTTAAGATG CAATTCAAGA TTTTATCTTG TGCTTTTCTT AGAACTGTTT TCTGTTGAAA TAACTGTGCC ATTTTGGAAG 001600 001601 CTGAATCACG GTTTATCATT TAGAGGTTAT ATATTAGATA ATGGTCATAA AAAATTTTTA AAAATGTAAA CCCCTTACGA 001680 001681 GACACTTTCT TTGCTTAACT AGATGCACCT TGGTGTGGAG TCAAAAGTAC ACATGCTGGA TCAAAATATA TAAGAACTGC 001760 001761 ATTTCCTACC AAAAAGAAGT GGGAAAGTGG GCACTGCTTA AAAGACAGAA ATGAACCCTG CCATATAATT CAAATATTGG 001840 001841 AGATAATGTC AGCAGTGAGA GATGAGGATC CACTGGAATT AGCCAATACA CTATATAACA ATACTATTAA AGTATTTTTT 001920 001921 CCTGGAATAT AATTGGTATA TGTCTTCCAC TTTCCATCAT GTATGTAAAA TTTCATAGTA AAACTTCCTG ATAGTTTCAA 002000 002001 TAAAGAAATT ATCTGC |
Predicted Small Protein
Name | NONHSAT128589_smProtein_320:412 |
Length | 31 |
Molecular weight | 3472.9903 |
Aromaticity | 0.166666666667 |
Instability index | 65.92 |
Isoelectric point | 10.0442504883 |
Runs | 5 |
Runs residual | 0.0355855855856 |
Runs probability | 0.0473237943827 |
Amino acid sequence | MFSRRSLGVINGKTYANDFFQFRSLLCLST |
Secondary structure | LLLLLEELLLLLLLLLLHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |