NONHSAT128083
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT128083 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2048 nt |
Genomic location |
chr8+:103255837..103265561 |
Exon number |
2 |
Exons |
103255837..103256349,103264027..103265561 |
Genome context |
|
Sequence |
000001 ACAAGCCATT TGCTCCCATA CTTAGTTTCT CTCAATTTCT GTGGCAGAAT TGAATATTCT TAAATGACAC AGCAAAAACA 000080
000081 TCACAGTACT CAGAATAGTG TAGGCAGTAT GAGTTTCCCC CAGGATGTTC AAAGTTATTG GAAGAGCAAA TGGAAAAAAA 000160 000161 TAACACGCGT AACTGAAAGA TCTCAAGGAG TAAGAGGATT CTGCATCTTC ATATGGACTT TATGGCATAT TGTATTTTCC 000240 000241 AAAAATGGCC ACAACAATAT TTCTGGTACC ATATGCTGTT CCAGAACTTG GATACACCTC CCCTTAAAAG GTGGTGTCTA 000320 000321 ATGCACTTCC CTTTGCATAT AGGCCATCAA TATTAACTTT TGTTTGTTTG TTTGTTTGTT TGTTTGTTTG AGACAGAGTC 000400 000401 TCGCTCGGGC ACCAGGCTGG AGTGCAGTGG CACGGTCTCG GCTTACTACA ACCTCCGCCT TCCGGATTCA AGTGATTCTG 000480 000481 CTGCCTCAGC CTCCCGAATA GCTGGGATTA CAGTGTTTCA GAATCACCTG GGATGATCTG CATGAAGATT CCTGGCCTCC 000560 000561 ACCAAAGACT TACTGAATCA GAAAGGAGGC AAGAGGATGA GGAATGCTTA AGAATCTGCA TTAACAAACT TTACAAATGA 000640 000641 ATCTTACAAC ATACAGAAGC ATGGAAACTA CTGCCTCAAG GGATTATCTC AACTTGAGTT TAAACATAGG AATTGCTGAC 000720 000721 TACCTTTAAA ATGTAAAAAT AGTATCTTTA TGGGAGGGAT GTTGTTTGGG GGCAGCTACT AAATAGTGAA ATCATTCCTT 000800 000801 TAAAATACCC TCTTAAGTCT GCCCCAGTTA TCCATTTTAC TGGATAGTCT TGGTATCCAG ATGATTTAGG GAAAAAAATA 000880 000881 GTAGTAGCAA ACTCTGAAAA CACTCAGTAA AGTTCATTCT TGGTCTTCTC TTCCTAAATT TGTTTTCAAT TGTTAGATTT 000960 000961 AAACACTAAA CAAGACCAAA AGAGAACTTT ATTTTACATG TCTTTATTTT ACATTTAGAA CCGTTTTATG ATTTACTTAA 001040 001041 AAAAAAAATC TTTTACTATT ATTAGAAGTA TTTTTTAACC AAAATCTTGA TTTAGGAAGA CTTAAGACAT TGTGCATTAT 001120 001121 TTTAAATATT TTCATTTCAG TAACTATTAA AAATAAATTC ACAATTAGGG TTTCAAATGT CCTAATCATA TCTAGTTTGT 001200 001201 TCTCATTTAA TATTTTATCA ATCCCATCAT GTGCATACAG AGGTTAAGGT GATGTATAAA TTTTATATCT TTCAAACACA 001280 001281 TTGATGCTAA TCAGCTCTTG ATCTAATTAC TATTTCATTT ATTCAGAAAT AGCATTTAGA CATAAAAACC AATGTCTCAC 001360 001361 TTTGTAAAAT AACCTTTGGC TAATTTACAC ACATCTAATA CAGCGTGTTA TATAAGTTTT AAGTAATACA ATGAGTCACT 001440 001441 ACTATCATTC AGTTTTAAAT ATTTTTAGTG TTAACAGGGC TGAGAATATC ATGTGGTTCA GTCTTCTGAA GGAAGTTATA 001520 001521 TAATAAAAGC ATAGTGCCTT TGAACATGAA GACTATCCTC AAGGCCAGAA ATCCTACAAA GGAACTGAAA GGAGAGATTC 001600 001601 CAGAGAATTG CTCTCCTCAT TTTTAATATG TAAAGTGACT GTTTTAAGTC ACTTCATTGA AGACTTAAGG AAGAAAACAG 001680 001681 TGTTATTATG CCACTGAATA AAGCTACTTA AACCAGAGTA ATTTTGGGAT ATTAATCCTA GGCTACATAA TTAATAGGTC 001760 001761 ATCAAAACAA AAACCTGTCA GTTATTAGGT GTAAGTTAAC TTCCTATGCC AAGTAAGGGG TCACACTTCA CTTCCCCCAT 001840 001841 TTGTAAAATG AAAAGGTGGC CAGGCCAGTG CCATTTAGGA TTCTCTGCTA ACTGTAAAAT GTGGACTGAT TTTCTTCTGT 001920 001921 TTCTTATAGT CCAGGTGTAT ATAAACTTCC AGTTCTTTAA GTCAAAATTT TTATGCACAT AACCATGTCA GTGTATTGCC 002000 002001 CTTAGTTTAA AAATGTACAA CTACATAAAT AAAAACTATT GTTTCTTC |
Predicted Small Protein
Name | NONHSAT128083_smProtein_1805:1981 |
Length | 59 |
Molecular weight | 6840.135 |
Aromaticity | 0.189655172414 |
Instability index | 46.7931034483 |
Isoelectric point | 9.55975341797 |
Runs | 8 |
Runs residual | 0.0186623721106 |
Runs probability | 0.0549593711358 |
Amino acid sequence | MPSKGSHFTSPICKMKRWPGQCHLGFSANCKMWTDFLLFLIVQVYINFQFFKSKFLCT |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLEELLLLLLLHHHHHHHHHHHHHEEEELLEEEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiii |