NONHSAT126985
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126985 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1067 nt |
Genomic location |
chr8-:66439031..66443926 |
Exon number |
2 |
Exons |
66439031..66439820,66443650..66443926 |
Genome context |
|
Sequence |
000001 CCACCCTGCT CCCACTCCTG AAATTCCATT TTCATGTAAA GGCTTCACCA CCCGCCTCCT CACTCTACTC AACCTTTTGT 000080
000081 AAAACCTCTC TCATCTCCAT TTCCAGTTAG TTTCCAAGTC CAGTCAATTT TACATGATAT CCTACATGGA CTCGTTCACT 000160 000161 GAGCTTAATT ATTATTAGCA AACATTAACG CATATTGTGT TATTTCTACA GAAATCAGCA AAAGGTCCTG GGGTATCCTC 000240 000241 TGTGTGGAAA ATAACCATGA TGCATCTTCA GTGTTGTtgg ctggaggtga agttcagaga tacggtgtct ttcctgagtt 000320 000321 gtgcagctca cgcatggagg gatcaggatg ggaactgaag cctgcatggc tcaaagtctt tgctttGAAG TGCTGCAAAT 000400 000401 ATGGCTTCCT GAGGAGGACT GCCCTGGACT GCAAATTTGT ATTACACAGA CAATACCTTT TCCCAGTGCC TTCTTCTGGA 000480 000481 CTTATGTCTA TGTATTTAGT AAATAACTTA TGAGTTTGTT TTTAAAAAAC CTATTGAGgg ctgggcatgg tggctcatgc 000560 000561 ctgtaatccc agcactttgg gaggccgagg cgggtgatca cttgaggtca gtagttcgag acccacctgg acaacatagt 000640 000641 gaaaccctgt ctctactaag aatataaaaa ttagctgggt atggtggcac acgcctgtaa tcccagctac tcaggaggct 000720 000721 gaggcaggag aatcacttga agccaggagg cggaggttgc agtgagccga gatcgtgcca ctgcactcca gcctgggcga 000800 000801 cagagtgact ctgtctcaaa aaaacaaaac aaaacaaaac aaaaaagcaa aaaacaaaac aaaacaaaaa aaacTATTGA 000880 000881 AATGTTTTAC AGGGAGAGGA ATAGGAGATT AAGGGGAAAT GCTACTTGCT GGAGGCCAGT GGAGAGGTAA AGAGGTTGGT 000960 000961 TACAATGGCT CAGCAACCTC ACTTGGTTTG CCTGGCCTGC AATTACTGGG AACATAGAAT GAGGTAACTC ATCATAGAGG 001040 001041 ACAACTGTTA AATGGACAAG GATGAGG |
Predicted Small Protein
Name | NONHSAT126985_smProtein_347:505 |
Length | 53 |
Molecular weight | 5983.945 |
Aromaticity | 0.173076923077 |
Instability index | 77.8230769231 |
Isoelectric point | 3.90533447266 |
Runs | 7 |
Runs residual | 0.0157540199913 |
Runs probability | 0.0449693390871 |
Amino acid sequence | MGTEACMAQSLCFEVLQIWLPEEDCPGLQICITQTIPFPSAFFWTYVYVFSK |
Secondary structure | LLHHHHHHHHHHHHHHHHLLLLLLLLLLEEEEELLLLLLLLEEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLL |
PiMo | oooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiii |