NONHSAT126573

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT126573

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

2724 nt

Genomic location

chr8-:53850991..53853677

Exon number

1

Exons

53850991..53853677

Genome context

Sequence
000001 CCTCAGTTCT CCTCACCCGG CATGGCCGCG CATCACCTGG AGGGCTTGGC AAGGTCAACC TGCGGGCACA GTCGCAGCGC 000080
000081 TTCCGATCTG CTAGGTCGGG TATGGGGCGC GAGTCGGTTT CCCCAGGAGG CCTAGGCGGC CTGTCTGGTC CCGCACTCTG 000160
000161 GCGCCGGCTC CTCCCTCGCT GGCCAGGAGT GGCGGGCAGT TGCGGAGCCG GACGCTGGGG GAGTCAGGCT GCCGCGCGGC 000240
000241 AAGTTATCAG CTGGCGGAGG TTCCTGCGGA AGCTGGCGTC CAGGAAGGCG TAGAGGAAGG GGTTGAGGCA GCTGTTGGCG 000320
000321 TAGCTCAGGC TGGTGATGAA GTAGGAGATA GCGATGACCA GCGGCGTCTG CGGGAGGTCG GTGGTGAGCG CCACCACGGT 000400
000401 GCTCAGGTGG TAGGGCGTCC AGCAGAGGAG GCACACCGCC AGGATTGCCA CCACCAGGAA GGTCACCCGC TTCTTGGCGC 000480
000481 GCTCCAGGGC CTTGGCGTGG CTGTCCAGCC GCATGGCATG CAGCCGGCAC AGCAGGGTGG TATAGAGGAC ACAGATGGTG 000560
000561 GACACGGGGA TGGCGAAGCC CAGCACGAGC GTGTAGAGGC GGCTCGCGCG CCACCAGAAG GCCTCGGGCT GCGGAAAGAC 000640
000641 TAGCACGCAC TGGCGCCGGC CCTGCTCGTC GTCTAGCCGG GCGAAGACTG CGAAGGGCAG CACGACGAGT GTGACGATCC 000720
000721 CCCACACGGC CAGGCTCACC GCGCGCGCGG CGCTGTAGGT GCGGCCGGCC ACCCGGCGCG ACTCCGCAGT GGCCAACACC 000800
000801 ACCAGGTAGC GGTCGGCGCT CATGACGGTG AGGAAGTAGA GGCTGGAGAA GGTGTTGTAC TGGTCGATAG CCACGATGAG 000880
000881 CTTGCACATG AGCTCCCCGA AGGGCCACTG CCGCAGCAGG AAGTCGGCGA TGTTGATGGG CAGCACCAGC GTGAAGAGCT 000960
000961 CGTCGGCGAT GGCCAGGTTG AGGATGAACA GGTTGGTGAC GGTCTTCATG CGGGGCGCCC GCAGCAACAC GTACAGCACG 001040
001041 GCGGAGTTGC CCGCCAGACC CACGGCGCAG ATCACCGCGT AGACAACTGG TACAGCCACC GCCAGCGGCG CCGGCAGCGG 001120
001121 CGCCAGAGTC GACGCGTTGG AGCAGCTCAG CGCCGGGTCC GGGCCCGATG CGTTGGCGGG CCAGGGCTCC GAGAACGAGG 001200
001201 CGTTGTCCAT CTCAACGAGG GCAGAGGAGC CGGCGACCTG GCGTCCCCCA AGGACGCCCT ACGGAGCTCA GCGGTCCTGA 001280
001281 AGCCCGGTTC TGCACGGACC TGCTCGCGGA CGCTCGTTTC AGCTCTCCAA GCCGTTCTCT GGTTTTTCCG GAGGAGGGGA 001360
001361 CCGTTCCCAG CCACCCCACG GCCCAATGTC GCCGCGGACT CACGGGGCTG GAAAGAGGAA TTTAAAGCAT AGGTTAGTTC 001440
001441 GTCGACGTGT AACTTTAGAA ATAGGCGCGG TCCCGAGGAG GGGTGGGGGT GGCGCCGCGG CGCCCCAAAC CTCCTCCACG 001520
001521 TGAGCGCTCT CTGCTACCTG TTGAAATCTC ACTTCTACCA GTTGAATACA TCAAACGAAA TGCTAGAGAG AGAAGAATCC 001600
001601 TCCATAGGAA AAATGCAAAC CCTTCTCCCC TCTTTCAGGA AACTTCCGTA GACCCAGGTT ACCCCACAGA ATCCCGCAGT 001680
001681 GGCAAGCTTC GGTCTCCCCA GGGTCTGTGC GCCCTCAGTA ACAGCAAGCT CAACAGCAGT CTTTACCTTA CCTGGCTGGC 001760
001761 TGGGGAAGGG GTCTGCCTTT CCTGGAGCTG TCAGGAGAAA AGCCCGCCGG CTGCGGGGAG GCTGAGACGC CTGCCGGCTG 001840
001841 GGTGTCCGCC TCCCCCTGTC TGCCTCCCCC GAGTTCGCCA GAGTCCGCAG CTCGCGTCCC CGCCGGTCCC TCCCGCGCGC 001920
001921 CTGGAAGTGC AGGGATGGCG CAGCCGCGAC TGCGTTCCAC TGCCCTGACC GCCGCGCCCA CCCCCACACC CCAAGTAAAA 002000
002001 TGGTCTTGGA ACAGAGAACA GAAATTCCCC CAAATTTAAG GGATTCCTTT CTTCCATCCC AGTCGTGCAA CCTCACTCCA 002080
002081 TCTGAAATAA TAGAAAGCTC TCCTGTTAAG AATCGAATTT AAGGAAAACA AAGTTAGGGT GTAAGTGATC TATTTTTAAA 002160
002161 GGAGAACAAT GCAGTGGAGG CGCCTGTTCC ATTTTTTATA CACCGTAACA CAAATAGGCT AATGTAATGT GAAATCTGAA 002240
002241 AGGAGGAAAA AGTGAGTGCA ATTTTATAAT GCAAATCACC TGTTTTCTGC TACTCTGGTC TTCAAGGGGA TAGAAGATTG 002320
002321 TTAGTATGTT TTCTAAAACT ACTTCTACTT CTACTTTTGT GTAAGTAAAG ACTTGATTAG TAAAGACAAA CGGCTTCCGC 002400
002401 AAAGCCTTTT AGGGAACCAT GACAATGCGT ATTTCATAAA ACGTTACAAG TTGTTCAACA CACTCTCTAC TTATCCACAC 002480
002481 ACTTGCCCGA TTCTCCTGCT AATGAGAGCT ATCCTGCGAT CGCAGCGGAG AGTAGCCAAG GAAGGACTAG CAGGGGCAGT 002560
002561 CTTGAACTCC CCTGTCGCTA TTTCCCTGGA CTTTGGATTC TTTCTCTAGG AAGGGAAAAT CATCTTAGGC TCCTCACCAG 002640
002641 TTCCCCTAAG AATCGAATGA AATAAACTAA ATATTGGTTA TTTCCAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 002720
002721 AAAA
[back to top]

Predicted Small Protein

Name NONHSAT126573_smProtein_875:1081
Length 69
Molecular weight 7402.619
Aromaticity 0.0294117647059
Instability index 58.8602941176
Isoelectric point 12.008605957
Runs 7
Runs residual 0.037559618442
Runs probability 0.0320236202589
Amino acid sequence MSLHMSSPKGHCRSRKSAMLMGSTSVKSSSAMARLRMNRLVTVFMRGARSNTYSTAELPA
RPTAQITA
Secondary structure LEEELLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHLLLEEEEEELLLLLLLLLLLLLL
LLLLLLLL
PRMN -
PiMo -