NONHSAT126573
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126573 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2724 nt |
Genomic location |
chr8-:53850991..53853677 |
Exon number |
1 |
Exons |
53850991..53853677 |
Genome context |
|
Sequence |
000001 CCTCAGTTCT CCTCACCCGG CATGGCCGCG CATCACCTGG AGGGCTTGGC AAGGTCAACC TGCGGGCACA GTCGCAGCGC 000080
000081 TTCCGATCTG CTAGGTCGGG TATGGGGCGC GAGTCGGTTT CCCCAGGAGG CCTAGGCGGC CTGTCTGGTC CCGCACTCTG 000160 000161 GCGCCGGCTC CTCCCTCGCT GGCCAGGAGT GGCGGGCAGT TGCGGAGCCG GACGCTGGGG GAGTCAGGCT GCCGCGCGGC 000240 000241 AAGTTATCAG CTGGCGGAGG TTCCTGCGGA AGCTGGCGTC CAGGAAGGCG TAGAGGAAGG GGTTGAGGCA GCTGTTGGCG 000320 000321 TAGCTCAGGC TGGTGATGAA GTAGGAGATA GCGATGACCA GCGGCGTCTG CGGGAGGTCG GTGGTGAGCG CCACCACGGT 000400 000401 GCTCAGGTGG TAGGGCGTCC AGCAGAGGAG GCACACCGCC AGGATTGCCA CCACCAGGAA GGTCACCCGC TTCTTGGCGC 000480 000481 GCTCCAGGGC CTTGGCGTGG CTGTCCAGCC GCATGGCATG CAGCCGGCAC AGCAGGGTGG TATAGAGGAC ACAGATGGTG 000560 000561 GACACGGGGA TGGCGAAGCC CAGCACGAGC GTGTAGAGGC GGCTCGCGCG CCACCAGAAG GCCTCGGGCT GCGGAAAGAC 000640 000641 TAGCACGCAC TGGCGCCGGC CCTGCTCGTC GTCTAGCCGG GCGAAGACTG CGAAGGGCAG CACGACGAGT GTGACGATCC 000720 000721 CCCACACGGC CAGGCTCACC GCGCGCGCGG CGCTGTAGGT GCGGCCGGCC ACCCGGCGCG ACTCCGCAGT GGCCAACACC 000800 000801 ACCAGGTAGC GGTCGGCGCT CATGACGGTG AGGAAGTAGA GGCTGGAGAA GGTGTTGTAC TGGTCGATAG CCACGATGAG 000880 000881 CTTGCACATG AGCTCCCCGA AGGGCCACTG CCGCAGCAGG AAGTCGGCGA TGTTGATGGG CAGCACCAGC GTGAAGAGCT 000960 000961 CGTCGGCGAT GGCCAGGTTG AGGATGAACA GGTTGGTGAC GGTCTTCATG CGGGGCGCCC GCAGCAACAC GTACAGCACG 001040 001041 GCGGAGTTGC CCGCCAGACC CACGGCGCAG ATCACCGCGT AGACAACTGG TACAGCCACC GCCAGCGGCG CCGGCAGCGG 001120 001121 CGCCAGAGTC GACGCGTTGG AGCAGCTCAG CGCCGGGTCC GGGCCCGATG CGTTGGCGGG CCAGGGCTCC GAGAACGAGG 001200 001201 CGTTGTCCAT CTCAACGAGG GCAGAGGAGC CGGCGACCTG GCGTCCCCCA AGGACGCCCT ACGGAGCTCA GCGGTCCTGA 001280 001281 AGCCCGGTTC TGCACGGACC TGCTCGCGGA CGCTCGTTTC AGCTCTCCAA GCCGTTCTCT GGTTTTTCCG GAGGAGGGGA 001360 001361 CCGTTCCCAG CCACCCCACG GCCCAATGTC GCCGCGGACT CACGGGGCTG GAAAGAGGAA TTTAAAGCAT AGGTTAGTTC 001440 001441 GTCGACGTGT AACTTTAGAA ATAGGCGCGG TCCCGAGGAG GGGTGGGGGT GGCGCCGCGG CGCCCCAAAC CTCCTCCACG 001520 001521 TGAGCGCTCT CTGCTACCTG TTGAAATCTC ACTTCTACCA GTTGAATACA TCAAACGAAA TGCTAGAGAG AGAAGAATCC 001600 001601 TCCATAGGAA AAATGCAAAC CCTTCTCCCC TCTTTCAGGA AACTTCCGTA GACCCAGGTT ACCCCACAGA ATCCCGCAGT 001680 001681 GGCAAGCTTC GGTCTCCCCA GGGTCTGTGC GCCCTCAGTA ACAGCAAGCT CAACAGCAGT CTTTACCTTA CCTGGCTGGC 001760 001761 TGGGGAAGGG GTCTGCCTTT CCTGGAGCTG TCAGGAGAAA AGCCCGCCGG CTGCGGGGAG GCTGAGACGC CTGCCGGCTG 001840 001841 GGTGTCCGCC TCCCCCTGTC TGCCTCCCCC GAGTTCGCCA GAGTCCGCAG CTCGCGTCCC CGCCGGTCCC TCCCGCGCGC 001920 001921 CTGGAAGTGC AGGGATGGCG CAGCCGCGAC TGCGTTCCAC TGCCCTGACC GCCGCGCCCA CCCCCACACC CCAAGTAAAA 002000 002001 TGGTCTTGGA ACAGAGAACA GAAATTCCCC CAAATTTAAG GGATTCCTTT CTTCCATCCC AGTCGTGCAA CCTCACTCCA 002080 002081 TCTGAAATAA TAGAAAGCTC TCCTGTTAAG AATCGAATTT AAGGAAAACA AAGTTAGGGT GTAAGTGATC TATTTTTAAA 002160 002161 GGAGAACAAT GCAGTGGAGG CGCCTGTTCC ATTTTTTATA CACCGTAACA CAAATAGGCT AATGTAATGT GAAATCTGAA 002240 002241 AGGAGGAAAA AGTGAGTGCA ATTTTATAAT GCAAATCACC TGTTTTCTGC TACTCTGGTC TTCAAGGGGA TAGAAGATTG 002320 002321 TTAGTATGTT TTCTAAAACT ACTTCTACTT CTACTTTTGT GTAAGTAAAG ACTTGATTAG TAAAGACAAA CGGCTTCCGC 002400 002401 AAAGCCTTTT AGGGAACCAT GACAATGCGT ATTTCATAAA ACGTTACAAG TTGTTCAACA CACTCTCTAC TTATCCACAC 002480 002481 ACTTGCCCGA TTCTCCTGCT AATGAGAGCT ATCCTGCGAT CGCAGCGGAG AGTAGCCAAG GAAGGACTAG CAGGGGCAGT 002560 002561 CTTGAACTCC CCTGTCGCTA TTTCCCTGGA CTTTGGATTC TTTCTCTAGG AAGGGAAAAT CATCTTAGGC TCCTCACCAG 002640 002641 TTCCCCTAAG AATCGAATGA AATAAACTAA ATATTGGTTA TTTCCAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 002720 002721 AAAA |
Predicted Small Protein
Name | NONHSAT126573_smProtein_875:1081 |
Length | 69 |
Molecular weight | 7402.619 |
Aromaticity | 0.0294117647059 |
Instability index | 58.8602941176 |
Isoelectric point | 12.008605957 |
Runs | 7 |
Runs residual | 0.037559618442 |
Runs probability | 0.0320236202589 |
Amino acid sequence | MSLHMSSPKGHCRSRKSAMLMGSTSVKSSSAMARLRMNRLVTVFMRGARSNTYSTAELPA RPTAQITA |
Secondary structure | LEEELLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHLLLEEEEEELLLLLLLLLLLLLL LLLLLLLL |
PRMN | - |
PiMo | - |