NONHSAT125535
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125535 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2656 nt |
Genomic location |
chr8+:22925742..22941132 |
Exon number |
3 |
Exons |
22925742..22925933,22938498..22938569,22938761..22941132 |
Genome context |
|
Sequence |
000001 AGCATCGAGT CGGCCTTGTT GCGGAACGGA ACCACTGGGC CGCAGCGACC ACAGGGGAGT TCTTCGCCGG CCGCAGGTTC 000080
000081 AAAGCGATCT GCAATGAGCG CCTTTAGGAA TTCATTCGAA GGCGCAAAAG AAAAAGAAAT TAAGGCAGGA ACTGAGCGAG 000160 000161 GAAGGAAGGG AGGGAAAGAA AGGAAGAAAG AGAAAAAGAG AAAGAAACAG AAAGAACAGG CAAAAGCTGA AAGGGTCATG 000240 000241 GGAGGAGGCT GCTGGTTCCA GTGAATGGCG CTGACCCCAC TGAGATCAAC ACCTTGCTGG AGGCCTCAAA CACTGAAAGA 000320 000321 AAGACATGCA AAGGAAATAA TTCAGGACCA ACTGGTGGGC TCCAAAAATC TCTTCTATGA GGAAGGTGAA TGCAGGCTCT 000400 000401 GCTACGTCCT GCCTGTGAAA GAATCCCTTC AGGAAACCAG AGCTTCCCTC GTTTACCTTT TCTCCTACAA AGGGAAGCAG 000480 000481 CCTGGAAGAA AGAGTCCAGT ACTTGACCCA TGCCTCAACA AACTCTGCTA TCAATATGGT GCAGCTTACC AAAGGTCCTA 000560 000561 GAACTTTGTC AACGCACTTG GAGTAATTTT TATGAAATAT TGTGTGTGAT AAGCAAACTG TGGAAATTTA TATAAGATGT 000640 000641 TGGTGGCATA GAGTTATACG ATTGTGTATT AAGGGTAGTT TTAGGATGTC ATTTTTTTTT CAGTTCATCA TGACAGAAGT 000720 000721 CCTTTTCATG AGAGAAGTCA CATGAGAAAA AACTTTCTTA TATTGTAAGC TCCTTCTATA GTGGTATGTG CATTTAATGA 000800 000801 CATCCAACTA AAGATGGTGT AATACCACGG TGGTTTGACT TAGAGTTTTT TAACTTTATA TCTGGTTTAT CTGGGTATTA 000880 000881 CATGCGTTTT AAATGTGGAT CTTTTCAACT TACGATGAGA TTATCAAGAC ATAGCCCCAT GCTAAGTCAT GAGCATGTGG 000960 000961 ACTTATAATG GTTCAATTTA GATTTTTCGG CTTTAAGATA GGATTATTGG GGCTTACCCC CATCTTAAGT AGAGAAACAT 001040 001041 CTGTATTGTG TAATACTATA TGATGTACAT TTTTCTGTTT TCCTATTTTC GTGCATGTTG ATGTAAGCAT GGAAAAATTT 001120 001121 TAGGAAATGT ATTTATTAGG CTGTTTACAT GGGCTGCCTG GTGCAAATCA GCAGTCAAAA ATGACTACAT ACACAACTAG 001200 001201 CAATGGGAGG AGAAATCCTC CCTCTGTGGG AGGCACTGAC TACATTCCAG TTCTCCCTCC TACGCCCAGA GACTGGACCA 001280 001281 GGGTTTGATG ACTGGCAACT TCTCAAGGGG CCGGTCTGTC TTAGTTGATG ATTTTAGAGG TATATAGAGG TATTTATTTA 001360 001361 CAAATAAACA AATATTTATT TATAAGTAGA TGTTTACATA TGCCCAGGAT TTTGAAGAGC CTGGTATCTT TGGGAAGCCA 001440 001441 TGTGTCTGGT CTGTCCTGCT GGGACAGTCA TGGGACTGCA TCTTCGTCCT TGTCCACAGC AGATGAGGAC AGTGAGAATT 001520 001521 AGGTTAGATC TGGGACTACA AATAGCTTCT CTTTCAAGTG CCATTACAGC TGAACATTAG TGAATCTTGG GCCTTCTTTG 001600 001601 GGCTCAGGGC AGAGCAGGTG TTTATCTGCC CCGGCATCTG CTATGGCATC AAGAGGGAAG AGTGGACGGT GCCTGGGAAT 001680 001681 GGTGTGAAAT GATTGCTGAC TCAGGAGTGG ATGGGCCCCT CTCGCTTCTG GTGGTCTGTG ACCCTGAGCC CCTGAGCTGC 001760 001761 ATTTTACGGT AAAGATTCCT GAGCTGCAGC ATCTGACTCA TCTCAGAAAT ATCAATTCTT AAACACTGTG ACAACAGGAC 001840 001841 CTAGAATGGC TGACACATTA AGGCTTTGTC CTTGTGTCAC GCTCTATTAT TTTATTTAAA AACTTCAGTA ATCATTTTAG 001920 001921 CCTCTTTCCA GCAAACTCTT CTCCATAGCA GTCCAGTAGT GGTAGGATAA ATTATGGATG TAGTCGTTCA AGGGATTTTG 002000 002001 GTCTTTTCCA TCTCAAGCCA TGTGTTTTGT CTTGTTCCGG GACTGGTTTG GCTGGGACAA AGTTAGAATT GCCTGAAGAT 002080 002081 TTAGGCACAT TCAGTGTTGT GTCCATGGAG TTTTAGGAGG GGGTAGCCTT TCTGGTCTTT GCACTTCCAT CCTCTCCCAC 002160 002161 TTCCATCTGG CGTCCCATGC GTTGTCCCCT GCACATCTGG AAGACACAAG GTGCTGCTGC CACCTGGTCT TTGCTTTTGC 002240 002241 AGGGCCTTCT GTGCAGGACA CTTGGCCTCA AAGCCCAGAG GGAGCCAGTC CAGCCCCAGC TCCCTTGTGC CTTCCGTAGA 002320 002321 GGCCTTCCTT GAAGATGCAT CTAGAGTGTC AGCCTTATCA GTGTTTGTTA AGCTTATTCT TTTAAAGTAA GCTTCCTGAC 002400 002401 AACATGAAAT TGTTGGGGTT TTCTGGAGTT GTTTGGTTTG TATGGGATTT GCTTTATCCC CAAGCCAAAC AGCACATGAC 002480 002481 ACACGACAGC CACTTAAGAC AGTGTGTCAC TCGTGGTTAG AGTCCTTTGA TGTTTCTGCC CTATGGACCC TATTTGAAGA 002560 002561 CTATGTTGTA ATATCAAACA ATACAAGGAA GCACGTTATA CAGAAAATGC TCATATGTTT ATGAATTTTG ACCAAAATAA 002640 002641 ATAGAAATCT TATATT |
Predicted Small Protein
Name | NONHSAT125535_smProtein_2441:2623 |
Length | 61 |
Molecular weight | 6907.9264 |
Aromaticity | 0.1 |
Instability index | 49.2983333333 |
Isoelectric point | 6.80511474609 |
Runs | 11 |
Runs residual | 0.0335992907801 |
Runs probability | 0.0376419199949 |
Amino acid sequence | MGFALSPSQTAHDTRQPLKTVCHSWLESFDVSALWTLFEDYVVISNNTRKHVIQKMLICL |
Secondary structure | LLEELLLLLLLLLLLLHHHHHHHHHHHLLLHHHHHHHHLLEEEEELLLHHHHHHHHHHLL |
PRMN | - |
PiMo | - |