NONHSAT125535

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT125535

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2656 nt

Genomic location

chr8+:22925742..22941132

Exon number

3

Exons

22925742..22925933,22938498..22938569,22938761..22941132

Genome context

Sequence
000001 AGCATCGAGT CGGCCTTGTT GCGGAACGGA ACCACTGGGC CGCAGCGACC ACAGGGGAGT TCTTCGCCGG CCGCAGGTTC 000080
000081 AAAGCGATCT GCAATGAGCG CCTTTAGGAA TTCATTCGAA GGCGCAAAAG AAAAAGAAAT TAAGGCAGGA ACTGAGCGAG 000160
000161 GAAGGAAGGG AGGGAAAGAA AGGAAGAAAG AGAAAAAGAG AAAGAAACAG AAAGAACAGG CAAAAGCTGA AAGGGTCATG 000240
000241 GGAGGAGGCT GCTGGTTCCA GTGAATGGCG CTGACCCCAC TGAGATCAAC ACCTTGCTGG AGGCCTCAAA CACTGAAAGA 000320
000321 AAGACATGCA AAGGAAATAA TTCAGGACCA ACTGGTGGGC TCCAAAAATC TCTTCTATGA GGAAGGTGAA TGCAGGCTCT 000400
000401 GCTACGTCCT GCCTGTGAAA GAATCCCTTC AGGAAACCAG AGCTTCCCTC GTTTACCTTT TCTCCTACAA AGGGAAGCAG 000480
000481 CCTGGAAGAA AGAGTCCAGT ACTTGACCCA TGCCTCAACA AACTCTGCTA TCAATATGGT GCAGCTTACC AAAGGTCCTA 000560
000561 GAACTTTGTC AACGCACTTG GAGTAATTTT TATGAAATAT TGTGTGTGAT AAGCAAACTG TGGAAATTTA TATAAGATGT 000640
000641 TGGTGGCATA GAGTTATACG ATTGTGTATT AAGGGTAGTT TTAGGATGTC ATTTTTTTTT CAGTTCATCA TGACAGAAGT 000720
000721 CCTTTTCATG AGAGAAGTCA CATGAGAAAA AACTTTCTTA TATTGTAAGC TCCTTCTATA GTGGTATGTG CATTTAATGA 000800
000801 CATCCAACTA AAGATGGTGT AATACCACGG TGGTTTGACT TAGAGTTTTT TAACTTTATA TCTGGTTTAT CTGGGTATTA 000880
000881 CATGCGTTTT AAATGTGGAT CTTTTCAACT TACGATGAGA TTATCAAGAC ATAGCCCCAT GCTAAGTCAT GAGCATGTGG 000960
000961 ACTTATAATG GTTCAATTTA GATTTTTCGG CTTTAAGATA GGATTATTGG GGCTTACCCC CATCTTAAGT AGAGAAACAT 001040
001041 CTGTATTGTG TAATACTATA TGATGTACAT TTTTCTGTTT TCCTATTTTC GTGCATGTTG ATGTAAGCAT GGAAAAATTT 001120
001121 TAGGAAATGT ATTTATTAGG CTGTTTACAT GGGCTGCCTG GTGCAAATCA GCAGTCAAAA ATGACTACAT ACACAACTAG 001200
001201 CAATGGGAGG AGAAATCCTC CCTCTGTGGG AGGCACTGAC TACATTCCAG TTCTCCCTCC TACGCCCAGA GACTGGACCA 001280
001281 GGGTTTGATG ACTGGCAACT TCTCAAGGGG CCGGTCTGTC TTAGTTGATG ATTTTAGAGG TATATAGAGG TATTTATTTA 001360
001361 CAAATAAACA AATATTTATT TATAAGTAGA TGTTTACATA TGCCCAGGAT TTTGAAGAGC CTGGTATCTT TGGGAAGCCA 001440
001441 TGTGTCTGGT CTGTCCTGCT GGGACAGTCA TGGGACTGCA TCTTCGTCCT TGTCCACAGC AGATGAGGAC AGTGAGAATT 001520
001521 AGGTTAGATC TGGGACTACA AATAGCTTCT CTTTCAAGTG CCATTACAGC TGAACATTAG TGAATCTTGG GCCTTCTTTG 001600
001601 GGCTCAGGGC AGAGCAGGTG TTTATCTGCC CCGGCATCTG CTATGGCATC AAGAGGGAAG AGTGGACGGT GCCTGGGAAT 001680
001681 GGTGTGAAAT GATTGCTGAC TCAGGAGTGG ATGGGCCCCT CTCGCTTCTG GTGGTCTGTG ACCCTGAGCC CCTGAGCTGC 001760
001761 ATTTTACGGT AAAGATTCCT GAGCTGCAGC ATCTGACTCA TCTCAGAAAT ATCAATTCTT AAACACTGTG ACAACAGGAC 001840
001841 CTAGAATGGC TGACACATTA AGGCTTTGTC CTTGTGTCAC GCTCTATTAT TTTATTTAAA AACTTCAGTA ATCATTTTAG 001920
001921 CCTCTTTCCA GCAAACTCTT CTCCATAGCA GTCCAGTAGT GGTAGGATAA ATTATGGATG TAGTCGTTCA AGGGATTTTG 002000
002001 GTCTTTTCCA TCTCAAGCCA TGTGTTTTGT CTTGTTCCGG GACTGGTTTG GCTGGGACAA AGTTAGAATT GCCTGAAGAT 002080
002081 TTAGGCACAT TCAGTGTTGT GTCCATGGAG TTTTAGGAGG GGGTAGCCTT TCTGGTCTTT GCACTTCCAT CCTCTCCCAC 002160
002161 TTCCATCTGG CGTCCCATGC GTTGTCCCCT GCACATCTGG AAGACACAAG GTGCTGCTGC CACCTGGTCT TTGCTTTTGC 002240
002241 AGGGCCTTCT GTGCAGGACA CTTGGCCTCA AAGCCCAGAG GGAGCCAGTC CAGCCCCAGC TCCCTTGTGC CTTCCGTAGA 002320
002321 GGCCTTCCTT GAAGATGCAT CTAGAGTGTC AGCCTTATCA GTGTTTGTTA AGCTTATTCT TTTAAAGTAA GCTTCCTGAC 002400
002401 AACATGAAAT TGTTGGGGTT TTCTGGAGTT GTTTGGTTTG TATGGGATTT GCTTTATCCC CAAGCCAAAC AGCACATGAC 002480
002481 ACACGACAGC CACTTAAGAC AGTGTGTCAC TCGTGGTTAG AGTCCTTTGA TGTTTCTGCC CTATGGACCC TATTTGAAGA 002560
002561 CTATGTTGTA ATATCAAACA ATACAAGGAA GCACGTTATA CAGAAAATGC TCATATGTTT ATGAATTTTG ACCAAAATAA 002640
002641 ATAGAAATCT TATATT
[back to top]

Predicted Small Protein

Name NONHSAT125535_smProtein_2441:2623
Length 61
Molecular weight 6907.9264
Aromaticity 0.1
Instability index 49.2983333333
Isoelectric point 6.80511474609
Runs 11
Runs residual 0.0335992907801
Runs probability 0.0376419199949
Amino acid sequence MGFALSPSQTAHDTRQPLKTVCHSWLESFDVSALWTLFEDYVVISNNTRKHVIQKMLICL
Secondary structure LLEELLLLLLLLLLLLHHHHHHHHHHHLLLHHHHHHHHLLEEEEELLLHHHHHHHHHHLL
PRMN -
PiMo -