NONHSAT123314
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123314 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1844 nt |
Genomic location |
chr7-:129470575..129472418 |
Exon number |
1 |
Exons |
129470575..129472418 |
Genome context |
|
Sequence |
000001 GCAGAATTGT CAAATGACCT GCTGGGGGAG GTTGTAGGAG TTTAGCAGAT TTGAGTGTGG CTGCAGAGAG AGAGAGTGTG 000080
000081 TGTATGTGTG CACATGTGTG AGAGTGTGAG CGAGAGTGTG TGTGTGTCCA TCTAAGTGTG TGTGATGAAG GTGGGATAAG 000160 000161 GCTCCTCTGT TAGTGCTGGA AGCTCCTGTA ATTGCCGCAT GGATCCCACT GTGCCCTCTT GTTCTGTGCA AGTCTGTCCT 000240 000241 GTCTGGGCAC TAACCTTGGT CCCATGCATG TTTATGTTCT GGGTGGGGCT TTGCCTCTCC ACTGGGAAAC TGACTTTTGC 000320 000321 TGGGTTGAAC AGAGTCCCTT ATGCTTTTTG TCCTCTCCCT GCGCCTGGGA GAGGTGGGAG TAGGAGCCCA AACACACAGG 000400 000401 TACAGAAAGA TCTGGAAGAA GGCCTGGCAG TGAATCCAAG GACTCTGGGC CCCCAACAAT AGATGGTAGC GTAAGTCTGG 000480 000481 AGCAGCGGTG TTTCACCACC AAATGCCTTT CCAGGCTGCC CTTCCAACAC TCAGGAGAGC ATCCAGATCC CTGGGCAGAG 000560 000561 GCTCTACATT CTTGGCTTTA GAGGTGGTGG CAGCGGCAGC AGGTCAGAGC CACTTCTGGC GGTTTCCCTC CCCTTTTTAG 000640 000641 TGCCCATAGT TTTTGGATCC TCCCTTGAGT TTTACCAGCA CAAGCCATTC TTTGCCCCTG TTCACATAAC TGAGCTCAAG 000720 000721 CTCTTGCCAA ACACCAACAA GCAAGATGGT TGCAACCTGG CAACATTGAA TCCACCACCC TTGGGCTCCC TCTGGAAGCC 000800 000801 CCAGCACCGG GGGGCTTTTG GGCACAGGGT CAGTGGTAGC CATCTTAGAC ACTGACATTT GGCTTTGTCG TCAATTTCAT 000880 000881 CACCCTCCTT GAGGTTACTG TGCAGTTTCA ACCAGCATTT TATCCTAGTG AGGTCATTAT CAGGAGTTGC CATATCATCT 000960 000961 CTCCAGTACC TAACATTTCT CATCCACTTC AAAAGCTGTT CTGACTGCCA GCTGGCTGAT CTAAGCTCCT GAGGAATGTC 001040 001041 TCCTCTCAAA GGAATTTTTC CCTCCAAAGG CCCCCTGAAG TCCTAGTTGG CATTGGCCTG GCACATGCTT TATGTTAGGC 001120 001121 CTCCCGTTGG GATGGCTGAG AATCATGAAA GACAGATCCT CCGCTAGCCT CTGTGGGTCA AGTTTCTGGA CACCAAGTCT 001200 001201 CTGGGAACTA GTGTTTGATT TTAAATGGCA TGTGGCCCTT CCTTGTTTCA GTGACTTAGA AAAGTAAAAG CCATTTAAAA 001280 001281 AAGTTAGCAA GATTTTTTAT CGACTTCCCA ACTGGGCTTC CAGCCTTGTT GAATGAAATC ATCTATCTCT GATTGGGCGC 001360 001361 AACGAACTGC ATTTCTTTGG ACTTCTGAAT CCATGTTTGT GCTTTCTCTG GCCCGTGAAC ACCTCGGCGA TTCTGTTAGG 001440 001441 GATGGGATGA GTGGGAGGAA GCCCTTTGAG AAGGGGGAGC CGGCCCTGTC ATGCGCAGGT TTTCCACTCA TCTGAGGAAG 001520 001521 AGCCAGGGCT CTGAATTTAG CCTAACACTC ATCTTGGCTG TGGGCTTGGG AAGAAATGGC CATTATTTAC AGATTGTATT 001600 001601 TGGTACATAT TGTGTGATAC TTGAAAAGAT AAAAGGGACT GCCAGCCCCT AACTGAAATC TGAAGCTTTT TATCGCTTAT 001680 001681 TTTTCCTCGC CCTGTCTCCT CCCTTCCACC TTTCTCCTTG CATTGTGATG ATCTAGTAGG CACGTCTGTC AACAGGACAC 001760 001761 ATGCCTCCTC TGACTATAAC CTCTTAATAG TTGTGTATAA TGAAAACTGT AAACTTTTTT AAATAAACGT GTATATACCT 001840 001841 TGGC |
Predicted Small Protein
Name | NONHSAT123314_smProtein_1490:1651 |
Length | 54 |
Molecular weight | 5895.8568 |
Aromaticity | 0.0943396226415 |
Instability index | 46.9547169811 |
Isoelectric point | 10.1774291992 |
Runs | 6 |
Runs residual | 0.0470547630005 |
Runs probability | 0.0685980097746 |
Amino acid sequence | MRRFSTHLRKSQGSEFSLTLILAVGLGRNGHYLQIVFGTYCVILEKIKGTASP |
Secondary structure | LLLLLLLLLLLLLLHHHHHHHHHHHLLLLLEEEEEEEEEEEEEHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiiiii |