NONHSAT121277
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121277 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3682 nt |
Genomic location |
chr7+:66798436..66805449 |
Exon number |
4 |
Exons |
66798436..66799313,66799355..66800029,66800198..66801099,66804223..66805449 |
Genome context |
|
Sequence |
000001 aaaaaaaaaT TAAATTCCTA GCCAGGTCTT CCTATTGGGT GAGGAGGCCC TTCCAAAGTT CCAGCGAATT CCTTAGTCTG 000080
000081 ACAACTTTTC TCAATTCAGA AAGATGTGTT TGGTAACATA TATTAAAAGG CAGAAATATG CAAATGCATA AACAATAGAA 000160 000161 TTTGACATAA TTATGTGATA AAGTGAAATG CTCCTGCAGT TAGTTATTGA ACATGAAGGA CCTCTCTAAT TCTTCAGAGA 000240 000241 AACTGTGAGA TAATCTCTAC CATTTATGCT TAGCAAGGAG CCATGCTGCA GAGGAAAAGT AGAAATACAC ACGAGTGACA 000320 000321 AAAGCAAAAA AATATATATA TGAAAAACTC TGAAACCACC CTCAATGAAA AGTAATATGT CTGTATTTAA AGAGTAGGTA 000400 000401 AATCATATAG TGAATTTAGA AGGTAAAAAA CGAGGTCTAT AATTACATGA GTATATAGAA AATGTTAAGT GTTTTCGTGA 000480 000481 AAAGGTATAT AAACAATAAT GAATAATCAT TTCACATTGA AAATAATTTA ATTTTAAAAG GAGATAGTAC AAATAACAAA 000560 000561 AAAAAAAGTC GAAGTACGGT AATAGTAGAA ATTTCAAATA TTTTAGGAAT GTCTTTCTCC AGAGTAGCAT GTTGTTTAGA 000640 000641 AACTAAATTT CCACAGTAGA TTTCATAGCT CCTGAACATG AATTAAAACT TTGATATTAG CTGCAGAAAT GTACATTAGT 000720 000721 TTGTGGGGAG GGGATAAAGA AAATAATGTG CCAACCTTCC AACAATTTCC CCAAACAGAT TTTTGCATCT TGGTCATTAC 000800 000801 ACTTACTTTC AAGATTCTTT TCTTGGTTTA AACATGTAAT CTTGTCTCTT TGCTCACCTG CTCACTCTTC AAGCAAGCAT 000880 000881 TATTTTCCAA GGAATTTTTT CTTAATTTTT AAAATTTAAC AAGTTTAACT ACAATTAATA AAGTACTCCC GGCACAAGGA 000960 000961 CTCTGAAACA TTGTTTGGGT CTTGGAAAAG TTTGAAACTT CCAATTCATT AGGACTTTGA GTAACTATTT TGTACCTAAG 001040 001041 AATGAGAATT GATGGAGAGA GTGGTACTAA GCACATAATT TTATGAAATA TGATGAAAAC ATGAGAGTTT TGTTATGACG 001120 001121 CACATAACAA TAAAGAACCT GTTTCTTTTT AGCAGGCTCC TAAAAAGTAC TTCCCTTATA ATTATTAAAT AAAAACACTC 001200 001201 ACTTATTCAG TACTCAGCTA GCTTTTAAGA TCTGAATAAC AGAAGTACAC AGTGAGAGAG GTACTTACAT GGTTTCCTTG 001280 001281 GATACTGGAT GATGCCATTC AGGTCTATGT TTTTATCTGA AAATGGTGCC CTGTGGAGAA ACGAGGCTTG GTGAGTGGCT 001360 001361 GTTTATACAT AGTAAGTAAA TAGGAACTTT GTTTATTTTA CAAAGCATTT TTTATTTTGA CCCAGCTTTC CTTTTCTCAT 001440 001441 CACACCCAAC TCCTGTAAAC AGCAATAATA TGGTAGAACA GGTACTCTGT ACAACTCTTT TTAACTCCAC TTAAGAAATC 001520 001521 ATAATTATTA AGGCAGAAGC TCAGAATGCT TTGCCTTAAC CAAAAGATAA GAGAACTCAA GCTTTAGCCA GTTTCTAAAC 001600 001601 ATGAAGGGTT TCCATAGACC TTAGCTGCCA TTTTACATGT TCCAGTGTCA TCCTAGATTC CCAATAGTTT TAGTGCTATG 001680 001681 AGCATACAAT TTTGACATTC AGTCCCTCAG AACTACACAC ATTCTAATTT TGGTAGTATG AATAATCTCT CCTATGTGAT 001760 001761 AAGTTATTTA ACCTTCTAAT ATTTCTTAGA ATCGAAAAGA ACAAATGAGC TGCAGCAAAG AATGGCAAAT AACTTTTATG 001840 001841 CTTAACACAA TTTAATAACC TGAAATGAAG TAAGTATGTG CTATGTTTCC ATTAAAAAGT TTCCAGCCAC AATTAATTGA 001920 001921 ACGAAAACTT GTCTTGTTCC AAGATTATTC TTGGAAATGT AATTTTAAAA TCTGCTTGAA ATGAGGAAAC TTACTTTTTT 002000 002001 ATACCATATG AAAGCAATTT CATTTTTTAG GAATGATTTT TGGATAGACT TCCGATTGGA TATTTTCCAT TGGAACTAGC 002080 002081 AGCATAGGGG GTCGGGAGGG GGGAGGGGAG GGAAGCAATT CTGTGTTCTT TTGCCAGCAC TGACAAAGGT CTGGTTGTCA 002160 002161 GTGATACCTT TACAGCTAAA TTTACTCCAG AGTGACAGAA ACAGGTGCAC CTCGGCCTGC CAGACACTTG TGCAGAGAGA 002240 002241 TCACGCATCT CACGGCTTGA CGATCAAGGG GGCAAAGCCT CGGTCTTCAT AGAAAAGGAG AGGAGGCAAA CGCAGCCCAA 002320 002321 ACTGGGGGGT TTCTCTTCAA AGCCAGCTGG TCTGGCTTTA TTCTACAGGA ATTTTTTTAC CTGTCAGGGT TTGGACAACA 002400 002401 AAGCCCTCAG CAGGTGCTGA CGGGTACAAC TTCCTGGAGA AGCAGAAAGG CACTGATTTT TTTTCTAATT AGACTTTAAG 002480 002481 CATGTTGACT AGTAAACTAT AAGTAACAAT GATCACGTGG AAGTTGTTTA ATGAGTTGTT TCCAGGGAAG GCACTAGTGG 002560 002561 CTCATTTTTT CAGTCTACCC GAGGTCCCTG TACTTGAATG TTTGAGAAGC ACTTTGTTTC TTTTAAAGAT TTATTTTACT 002640 002641 TGGATTTTAA tttttatctt tatttttaga gaaaacatct tgctctgttg ctcaggctgg agcgcaatgg tgccatcgta 002720 002721 gcttactgta accttgaacg tctgtgctca agcaatcttc ctgcctcagc ctcctgagta gctgggacta caggtatgca 002800 002801 tcacaatgcc cagcGAATTA AAAACAACCt tttttttttt ttttttaaga gatggggtct cactctgtca cctaaattgg 002880 002881 agagcagtgg cactgtcata gctcactgtg gccttgaagt tctgggctga agcaatcctt ctgcctcagc ttcctgagtg 002960 002961 gctgggacta caggcatgaa ccactacatt cggctaattt taattttttt ttgtagagac agggtcttgt tctattgtcc 003040 003041 aagctggtct tgaattcctg acctcaagca atcctcctgc ctctgcctcc caaagcactg ggattattac aggtatgagc 003120 003121 caccgcactg ggccGTCATG CTTACTCTTC GGAGAGAGAA GTGAAGTATC TGAACGCCTC AGCCTGAGAA TGGGTCATTT 003200 003201 GCAAAGTAAA TAAAGGCAAT GCCAAACGTC AGTACAACAA GCAATTGAAC AGAATGATTG CAAACTGCTA ATGAAGGAGA 003280 003281 AGGCAAGGTG CGGTTAGGAT GAACTGTAGA AGGACCCGTC CCCTAGAGCT CATTGAGCAT CCACCCTGCT GTCCGGCTGT 003360 003361 CCTCTCCATA GGGGGCTCGA TGGTCTTTGC CGACTTGAGG AAATAGGTCA CTGTATTGCA GCAGATCCTT GGTCGTGGGG 003440 003441 CTGGGTTGGT CATTGCCACT ATTTTATGGG ATGGGGAATT TGGAAGATTA TGAAGTGTCA GCTGGTTGCC CTTGGACATG 003520 003521 CAGTGAGAGG GAGGATTCTG TTTTGCTGGA ATTTATAGtt tttctttctt tctttttttt tttttttgag acagagtctc 003600 003601 gctctgtcgc ccaggctgga gtgtgcagtg gctcgatctc ggctcacttc aagctccgcc tcccgggttc acgcctttct 003680 003681 cc |
Predicted Small Protein
Name | NONHSAT121277_smProtein_2795:2929 |
Length | 45 |
Molecular weight | 5045.843 |
Aromaticity | 0.136363636364 |
Instability index | 53.85 |
Isoelectric point | 9.78228759766 |
Runs | 9 |
Runs residual | 0.0414438502674 |
Runs probability | 0.0189895778131 |
Amino acid sequence | MHHNAQRIKNNLFFFFFKRWGLTLSPKLESSGTVIAHCGLEVLG |
Secondary structure | LLLLHHHHHHHHHHHHHHHLLLEELLLLLLLLEEEEEELEEELL |
PRMN | - |
PiMo | - |