NONHSAT121038
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121038 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2760 nt |
Genomic location |
chr7+:64141511..64147263 |
Exon number |
3 |
Exons |
64141511..64141600,64144465..64144583,64144713..64147263 |
Genome context |
|
Sequence |
000001 CTCGGCTTGG CGGCTGAGGA ATGACACTGC CCGAACACCT CGGAGGCCCC ATGGACCATC ATGGACCTCG GGTAACTCTT 000080
000081 AAGGTGGAGG GAAAGGTTGA AAGAGCCAAC GGCCTCTTAA AAACTCACCC TCCAACTCCG AAAGGACTGG ACTGTTCTCC 000160 000161 TACCACTTGT GCTTCTCAGG ATCTGAGCCA CCGCCCATGA ACCTACCAGA TACCCAGCCA TATGAGGACA CTCTGGCCAG 000240 000241 ACAGCCCATC CTGATAAAGA GCTTAACCCC CTGATCTCTA CAACCTCAGT GGACAGGACC CTTCCTGGTC GTTTATGGTA 000320 000321 CCCCAATGGC TGTCTGCTTA CAAGATCCTC CTCAGTGGAT TCACCCTTCC AGAGTAAAGC TGTGTCCATC TGACACTCAG 000400 000401 CCTGACCCTT CTTCCTCCTC TTGGAAGTCG CAAGTACTCT CCCCGACCTC GTTAAAACTC ACCGAAATCC CTGAAGAAAC 000480 000481 TTAAATGTCC TGCTCCTGTC CGCCCTGCTT CTTCACCCTC TTCCTCCACT CTATTTGCCA AGACATCTCC TGGTTTCATC 000560 000561 CCCAAACTCC CACCTTAGAT TCTCTCTTAA ACTGGATAGA TGATCTCATC TTTTAGGGCA CTCTGTATAA CTTCTTCCCA 000640 000641 GATGAGACGC CTCTGTTTAC CTTCCTACTC ACTCTTTATC TATCCCTCCT GCTCCTTTGG CTACCTGGCA TGGCCGCACT 000720 000721 CCCACTTCCA GTAATGCCTA ATTACCTCTA CAAAACTCTC AACCCACTCT CTGTTAAACC AGTCCAACCC TTCTTTGGCA 000800 000801 AAGGACGCTG GCTTTGCATT TCTCTATCAG CTACCACTTA CGTTGCCACT CTCATTCCCA CAAAAAACTG GGTAGTTACT 000880 000881 AGCTTAACCT ACCACCCTCG TAATGAAGGA AAAAGCCCCT TCTAACTCCT ACATATGCAG TCATTGGCCA ACTTCTCCAT 000960 000961 CAATGAAATG ACCGAAAATA CCCTGACAGG TCGTGCAGTT CAACTTTTAC GCTCCTACAT GTCCAGCCTC ACCCATTACA 001040 001041 CAAGTAATGA AAAGCCCATA CACGGCCCTG TGACTACAAA CGCTGTCTTA ACTTTCCAAG CCCCTTTATG CATCCAACAC 001120 001121 AACCTGTCAT CAGGCCTACC TCTAGGTCAC CTACTGTTCC ATCAGTGCAA CTACGCCTTG CAGCTTCAAG CCCCAACTGA 001200 001201 CTGTATTAAC TTCCAGGTCT CCCAAACAGC TACATTCAAA CAGCCTGTCC GCTTCTCAAA GCCCCCAGAA GTCATCAGCA 001280 001281 CCTCTCTGCT TAACAAACAA TCCGGGTTTT GTAATGGCAG GCATACGCAC TGCATGACCA TTCACCCCTG GACCTCCTGC 001360 001361 AGCAGCACTC CCACCACTGA CGAATGCCTC CTTATCCCCT CTTTCGATTA CCCTTCTGAG TGGCTCCTAG TAGATACAAA 001440 001441 ATGATTTTTC CTCCAATGGG AAAATAAAAC ACAGGGAGCC ACTCAGCTTA TCCCAAACAT CCCTTTTCAG CCGCTCACTG 001520 001521 GGGCCGCCTT GGCAAGTACC CTAGGGGTGT GGGAAAATGA AAACAAATTC ACACACCTTT TTAACATACA CAGCCAGTTC 001600 001601 TGCCTACCCA GCCAAGGCAT ATTCTTCTTG TGTGGAACTT CAACCTATGT CTGCCTCACC ACTAACTGGA CAAGCACCTG 001680 001681 TACCCTAATC TTCCTAAGCC CCAAAATTGA CATTGCCCCT GGAAACCAAA CCTTACCAGT CCCTGTCAGA GCCCAAGTCC 001760 001761 ATCAGCATAG GGCTGTGCAG ATAATACCCT TGCTTATAGG ACTAGGAGTT ACCAATGCCA CAGGAACTGG AATAGCAGGT 001840 001841 TTGTCCCCTT CCCTGTCCTA CTATCATACA CTCTCAAAGG ATCTCTCAGA CAGCCTACAA GACATAGCAA AATCCACCCT 001920 001921 TACTCTCCAA TCCCAAATAG ACTCCTTAGC AGCAGTAACT CTGCAGAACC ACCGTGGCTT AGACCTCCTA ACCGTCGAAA 002000 002001 AAGGTGGGCT ATGCACCTTT TTAGGGGAAG ATTGTTTTTC CACCAACCAG TCTGGACTAG TACGAGATGC TGCCTCGCAG 002080 002081 TTAAATGAAA AGGCTTCTAA AATCAGACAA TGTCTTTCAG ACTTTTAACA CCAATCTTTG GAGCTGGGCG TTGTGGCTTC 002160 002161 TCCCTATAGC TGGGCCCCTC ATTTCCATCA TTCTCCTTCT CCTATTTGGA CCCTGCCTCT TCCGTCTAGC CTCTCAGTTC 002240 002241 CTACAAAATC TCATTCAAGC TATTACCAAT CAATCTATGC GACAAATGCT ACTCCTAACT GCCCCTCAAT GTCACCCCCA 002320 002321 CCCCAAGATC TCTCTCCCAA TTAGGAGTCC ATGCCGCCCC AAGTCCCGCT CGAAGAATCC CTGAGAAACA TCACCCCGTC 002400 002401 CACTTCTTTT CTTATTAAAA CAAAAAGACA GGAATGTCAT ATCCCACAAA TATGGCTGCA TTATTGCCAG CAGGCCATTA 002480 002481 TTGACGGTGG GCCATTAAGA ACTCTGTGAC CAGCACATAT GCCTCCAGAC TTCCTGGAAC CAGAAAACCT GCAACAACCA 002560 002561 AAAACCACAA AAGAAGAACA ACGGGTTTCT GTTCCAACTG GTTGATCAAC TTCTTGAGTC AACAAGTCCC AAAACCATGT 002640 002641 TGTAATTTTC CACCCGCCAC TTTGCCCTGT AAAGACTGCT CTCCCTCACA CCTCCGGGCT GACTCCCTTT TCCGATTCAG 002720 002721 CCCACTAACA CCCAAGTGAA TAAACGGCCT TGTTGCTCAC |
Predicted Small Protein
Name | NONHSAT121038_smProtein_2084:2383 |
Length | 100 |
Molecular weight | 11347.534 |
Aromaticity | 0.0808080808081 |
Instability index | 51.6929292929 |
Isoelectric point | 11.399597168 |
Runs | 9 |
Runs residual | 0.0427807486631 |
Runs probability | 0.0456731241044 |
Amino acid sequence | MKRLLKSDNVFQTFNTNLWSWALWLLPIAGPLISIILLLLFGPCLFRLASQFLQNLIQAI TNQSMRQMLLLTAPQCHPHPKISLPIRSPCRPKSRSKNP |
Secondary structure | LLLLLLLLLEEELLLHHHHHHHHHHHHHLLLHHHHHHHHHLLHHHHHHHHHHHHHHHHHH HHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTTooooooooooooo ooooooooooooooooooooooooooooooooooooooo |