NONHSAT120007
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT120007 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3348 nt |
Genomic location |
chr7-:32961115..32982159 |
Exon number |
3 |
Exons |
32961115..32964203,32969690..32969720,32981932..32982159 |
Genome context |
|
Sequence |
000001 GTTATTGGCG CTTGCTCGGC ATTTGTGGAC CGAACAGGCA AGTTCAACCG AGCACGCTGC CCCCGCGCTC CACCTCTGAG 000080
000081 TTCCCTGGGC CACTGCGACA TGGAGAAACC CCGTTCTTTT CATCCTCTGC TACGGAGAAG GGACGAGGAC ACGGGTCCTG 000160 000161 CAGTGTTGGT GTGGCGAGGC CCGGAAGAAG AGAGAATGGG CGGCGGGGAC TGGCCACGGC GCTGCTAGTT ATGAAAAACC 000240 000241 TCCTCCTGGG CTTATCAAGA TGGAGTTTCG CTCTTGTTGC CCAGGCTGGA GTACAATGGC ATGATCTTGG CTCACCGCGA 000320 000321 CCTCCGCCTC CCAGGTTCAA GCGATTCTCC TGCCTCAGTC TTCCCAAGTA GCTGGGATTA CAGGCATGCG CCACTATGCC 000400 000401 TGGCTAATTT TGTATTTTTA GTAGAGGCGG GGTTTCTTCA TGTTGGTCAG TCTGGTCTCG AACTTCCAGC CTCAGGTGAT 000480 000481 CCGCCCGCCT CGGCCTCCCA AAGTGCTGGG ATTACAGGTG TAAGCCACCG CGATGGCCTG CTGTGTTTTA ATTTTCTGAC 000560 000561 ATCCCCTTTG ACTCATGGAT TGGTTACGCA TGTGTTATTC AGTTTCTACA TACTGGATTC TTCAAATTTC CTTATATTGT 000640 000641 TGCTTTGTAA TTTGAGTCCA TCCTAGTTAG AGAATATACT TTGTATGGTT TAAATCCTTT TAATTATATT AATTCTTGTT 000720 000721 TTATGGCCTA ATATAGGGTC TCTGGATAAT GTTCCATATT GACTTCAAAA AGTGTTTATT GTTGGGTGGT AGAGTGTTTT 000800 000801 ATAAGTAACT GTTAGGTTCA ATTGATTTAT ATTGTTGTTT AAGTCTTGTA ATTCATTGCT GATCTTCTCT CTAGTTGTTT 000880 000881 TATCCATTAT TGAATGAGGA GTATTGAAAT CTCTATTATT GTTACACCGT TCTATTTTCC CCTTCAATTC TATCAGTTTG 000960 000961 TGTCTCAACT ATCTGGCACT CTTTTGCTAG GTTACATACA TATTTATAAA TGTTGTATCT TCTTGATGGA TTGACCTTTT 001040 001041 TATCAATACA AAATATCCTT CTTTGTCTCT GGTAACAGTT TTTGTCTTAG GGTGTATTTT GTCTGAAATT ATCGGAGCAG 001120 001121 CTTTAGTTCC CTTTGGGTTA CTGTTTGCAT CATATATTCC TTTCCATCCT TTTACTGCCA ACCTAATTGG GTCTTTAAAT 001200 001201 CTACAGTGTG TCACTTATAT CTAGTGCTTG GATAGCATTT TTCCTTTTTT TTTTTTTTTT TTTTTTTTTG AGACAGGGCC 001280 001281 TCTCTGCTGC CCAGGGTGGA GTGCAGTGGC ACAATCACAG CACACTGCAG CCTAGACCTC CCAGGCTCAA GCAATCCTCC 001360 001361 CACCTCAGCC TTCTGAGTAG CTGGAACCAC AGGTGCTTGC CACCATGCCT GGCTAATTTT TAAAAATTTT TTGTACAGAC 001440 001441 GGGATCTCAC CTTGTTGCCT AGGCTATTCT CAAACTCCTG GGCTCAAGCA GTCCTCCTGC CTTGGCCTCC CAAAGTGTTA 001520 001521 GGATTACAGG CATGAGCCAC TGCACCTGGC GGATAACATT TTTATCCATT CTATAAATCT CTGCCTTTTG ATTGAAGTGT 001600 001601 TTAATCCATT TGCATGTAAT ATAATTACTG TTAAGGTAAT TACAAACCTA TGCACATGGT TTTGATTTTA CCAATTTTAG 001680 001681 TATTAATTAG AAAAGTGGTT CTCCCACTTT GATATTTCTA CAAATAACCA GTAAATCTTT TAAAATTCAG GTTATATGTC 001760 001761 CATATCAGGC CCAACCCAGA AATACTGAAT ATCCAGTATT TGAATATCCA AAATACTGAA TACTAGATAT TCAATATTTC 001840 001841 TGGGTTGGGT CCTATACCTT GCTTTTCTAA CAACCTTGCT CATATTGTTG AATTTGCTGG TCCATGGACC ACACTTTGAA 001920 001921 TATCTGGGAT CACCTTTCCA TAATAAGAGG ATTTTGAGCG GAAATGGTAT CTTCTGGATA TCTATACATC AATGCTTGTT 002000 002001 CCATGGCATT TCACATCCCT TCAGCTTTGC CATAAAGGCA CATATTAGTT TGAAAGAGTG TAGTCCTTCT CCCCCAAACT 002080 002081 TTAAATGGTG AGGGAGATAA GGATAGGGAT AGCTCACAGG CAATCAATAG AAATCCACAA ACTTAGGCCA GGCACAGTGG 002160 002161 CTCACACCTG TAATCCCAAC ACTTTGGAAG GCTGAGGTGG GCTGATCACG AGGTCAGGAG TTCAAAACCA GCCTGGCCAA 002240 002241 CATGACGAAA CCGTCTCTAC CAAAAATATA AAAAATTAGC TGGGTTTGGT GGCATGCATC TGTAATCCCA GCCACTTGGG 002320 002321 AGGCTGAGGC AGAAGAATTG CTTGAACCCA GGAGGCGGAG GTTGCAGTGA GCCGAGATCG CGCCACTACA CTCCAGCCTG 002400 002401 GGCAACAGAG CGAGACTCGT CTCAAAAAAA AAAAAAAAAC CCACAAACTT AATTTTTTTC AGTGGTTTCC TGCATTCAAT 002480 002481 CCTCAAATAA AAATAAAAAG AGAAAAACTT TCTTGCCCTG TCACTACGTA TTTTCTGTAG TTGCCAGCAT AGAGCAAACT 002560 002561 TGGCTGAACT TACCTAAATC CCTCTTCATA CTTCCCGACC TAGTTGCTTA GAATTGCTTA ATACTCAAAC ACAGGGTCTC 002640 002641 ATTCACCATT CCCATACAGT TTCCTGATTT ACACCACATC CAGATGGTGC TGAGAGGATA TGAACAGGCG AGAGAAGTAA 002720 002721 CAAGGATCTC ATCCATTCTT GCTTCACTCA CCACTTCCTT TTTCTCAGAG GTCAATGCCT GATGCCAGGT CCACTCACTG 002800 002801 AAATTCCATA AAGACTGGAA TTTGTTGCCT TGGAGCATGT ATATACATTC TCTTGTTATT CTCCTCCCAG TTCCTCATCA 002880 002881 GGACCTTCTG TTGCTTCTAA TAGTTAACCT CTTTAAATAG CACAGTTTCC CTCTTCTGAA AGTAAAGTTG CAGTAGGGTT 002960 002961 CTGATGGCAT TAATATTTTA AAAGAACTTG TGATTTTGTT TACTTAAAAG TGAGGGATGT GAACAGATGT CGACTCAACC 003040 003041 TGAGAAAGAA GGTATTTGTT CTAGTGACTA AATTTATAAA TGAGATTCAG AGCCACTTGA TTAATAGAAG ATATTTACTT 003120 003121 TGAAAAATAC AGCGAGACAC ACTAAAAAAA TTGACCTTTT GCAGTACTTT TCATTGGATT GCTTCATAAT TTCTTGGTGT 003200 003201 TGGAAAATTA ATTCCTAAAG CACAAGATTA AAGGATGCTT GGGTAAGCAA TTAGTTTACC TGTCTTTTCT GGGACCTTAC 003280 003281 ACGGTTCATC CATGATTGCA TTTTCTTTTA GAATTGGAGT TTAATGAATA AAAACTTTAA TATAATCT |
Predicted Small Protein
Name | NONHSAT120007_smProtein_230:370 |
Length | 47 |
Molecular weight | 5204.1309 |
Aromaticity | 0.108695652174 |
Instability index | 73.8717391304 |
Isoelectric point | 11.5689086914 |
Runs | 9 |
Runs residual | 0.0342908902692 |
Runs probability | 0.0437790731909 |
Amino acid sequence | MKNLLLGLSRWSFALVAQAGVQWHDLGSPRPPPPRFKRFSCLSLPK |
Secondary structure | LHHHHHHHLHHHHHHHHHHLLEELLLLLLLLLLLLLLEEEELLLLL |
PRMN | - |
PiMo | - |