NONHSAT119847
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119847 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
5583 nt |
Genomic location |
chr7+:30118702..30124266 |
Exon number |
1 |
Exons |
30118702..30124266 |
Genome context |
|
Sequence |
000001 ATTGTATTGT TTTTATATTT TAGTCTAATG GGCCACCCAA ACCCAAGCTG AAAATCAGCA AATTCCATAT TAAGTACCAT 000080
000081 AATTCATAGC CAGTGTTTCA GCCAACTTAG ACTAGACATT TGGAGGTAGT ATAAGCTGCT TTGTTGAAGC TGTGTAGAGT 000160 000161 TTGCTGTTCC TAGATGTTCT TCAGTGGACC CTCTTCACTG CAACTCTGTC AGTGATAAGG GCCTGTGTAG TAAAGATGTT 000240 000241 CAGGGCATTC ACATGACCAT GCAATTGTGG GAGGCGAAGA AGACGTGGAC AGGAGTCCCA TCCTTGCTGA CAGGCATGAA 000320 000321 ACCGTTGCTC TGAGAAGATT AATGGTGTGC CCTAGCCCCA AGTTGGAGGG GAGAATATGA GAGAGGTGGG GCAGGTCATT 000400 000401 TGAGATGACA CCTCCCAACT GCCTACCATT TACCAGCATG TTCCCCATGC ATTATCTCAA TTGGACATCA CAAGTAATGA 000480 000481 TACCCAGAGG GATTATTACT CCACTTCAAA AGCAAGGTTT AGAAGTTGAG GGATCTGTTC ACAGTCACAT AGTTTTTAAG 000560 000561 CAGAGGAGCC AGATAATTTC CAAGTGTGAC CTGGACTGCC TCTGCATCAA AGTCATATGG AGTGCTTGTT CAAACAGCAG 000640 000641 ATTCCCAGGC CTTATTTTGG CCTAAAGAAC CAGAGTCTAG GTGGTGGGAC ATAGGAATCT GCATTTCAGT AAACTTTACA 000720 000721 CGTGATTCTT CTGCACACAG TATTGAAGAG CAACTAGATT AAATTCTAGT TTACAAAATT ACCAGTTTTC TTCAAGAACT 000800 000801 AAATGATATG TCCTTTTTTT TTTTTTCAAA GAGGATAAGG CTGCTATTTA AATAAAATAG CTAAATGGAG AGTGAGAAGT 000880 000881 GGAGCAGGTT CATTCAGCAG CATTCTTAAT TGAGCCAGCA TTGACACCCA GCCAGCAGGC CTTTGCATTG CATTCGGGGA 000960 000961 CCATGACTCT GAATCTGCTT ACCAATCAAT CTCGGTTTAA TCACCAAAAG TGCAGAGCAG GCAAAATGCA GCTGTTTATC 001040 001041 AATCTCAAAA GCTTTGGGAC AGTGTCATAG TTGAAAGATG AGACTTAAGA AAACAGTTTC TTAAACTTCT TAAAACTTAA 001120 001121 GAAACATTGT TTCATAAAAC AATATTGAGT GGGCATTCTT CTGCACAGTG TGATGCTCCA ACCCTGGCCC TAGTCTCAGT 001200 001201 AGACCATGCT GCCTCGAGTG TGCATCGGAG AGAAGCCATG GGTACCTTCC CCATTAGAGG CTACTTCCTT CTAGTAACAG 001280 001281 GAAGGGAAGT TCCAGCATGA GGTAGTTATC CAGGGTAGAA GGTCCTTTGA GGGGCTTGGT TGAATTGAGA GCATCATCTC 001360 001361 TAGATGATGC TGTTCCTGCT GCAGATCTCT AGGATGGAGA GAATTCTCTC TTTAGTCAGA GAAGTTTATG TAGGGAGGGG 001440 001441 TATTGGTTTT GCCTTTGTGT GTCTTTAAAC AAATGAACAT TTATTTAGCT CAGATTAATT AGGTATTTTG CCCACATAAA 001520 001521 GACTTCTGGA AAATACTTAA ACTTGAAAAA TCAACATCAC ATGTTTTAAA GCTAGGGAGA AAGAAGGGGG GTATTAAAAT 001600 001601 GATGTTGATT ATTTTGTATT TTGCCAAGGT GTGTGTGTGT TATTTCCCTC CCACTCTCAT GAGCAGTGAG TATAGATCTC 001680 001681 CTTCTCTGAT TAGTATGAAT ATGATGGCAG GACTCGGGGA TAGTCCCTGC CCTTGACATA GCCCCCTAAA ACGGAAAAAG 001760 001761 AAAAAGCCAG TTTTTGCTTG TACTTTGAAT GAAGATGTTT TAGGCATTGT ACCATTTAGC GGGGATGATA CCAGGTGGTT 001840 001841 GTTAGAATTG TGCAGTGTGA TCATTCTAAA CAGCTGCTGG TGCTCCCTGT CACCTCAGGT GAACTCTGTG GTCTCTTGGA 001920 001921 GAGGTAGCAC TCTGAAAATA CCTCAGGTTT GCCACCGCAA CCCTGAATAC ACACAAAAGG AAAGCTGCTC AGCATGGCCA 002000 002001 TTTTGCATTT GTATAGGTAG TGACTAGATG TACACAACTT AATTTGCTGG GAATGAGGGG CTTAATATTA TCTGAGATCA 002080 002081 TTGAGAACCC AGATCAGACA GAATAGCTTG AATAAGTTAC ATTTTCCAAT TACCCTTTTT CCACATCTGT AGAAAGAGGG 002160 002161 TAATATTTTT TAATAGGTAT TTTCCCCACT GGAGCATATT ACGTTTGCCT AAGATGTATA AAAGTTTGTT TAAGATGTGT 002240 002241 AAAAGTTTGC TTAAGGAACT GAGGATCCTT AAATAAAAAT ATTAGAAATT AGAAATTGAA CCTAATACTA AACAGTAAAT 002320 002321 TCAGCTTAAC CTGAACCTTG GCATAGTCAG AGCTTCCTCC TACATCTAAA GTATTTGCTC TCTGTTTTAG TTAAAGTCAT 002400 002401 AATTTGCGCT GATGTGTAAT CACTTTCCAA GAAGAGGGCA ATGAGAAAAG ATATTTAAAG CTTTCTCTCC ATAGCCCTCC 002480 002481 AAGACTTCTG GGACAACTAA ATTTACTTTC ACCATTACTG TGAGAGGAGG TGAGAAAACT CTAGTATTTT GTTGGCAGAG 002560 002561 TAATCACTTT GTTCTCATCG CTCAAAGCAT TTTTAGGATT ATTTTTCTAG CGTAACCTTT AGAGAGAACT GGAAGAAAAA 002640 002641 GGAAATTGGT CTACTAGGTA TTGTAGACAC AAATAAGTAA CATTAGGCTA ACCCCTTATG AGACATTTCC ACACAATTTC 002720 002721 ATCGTGCCTG TACTTTTCTC TATGGTAAAA GCCAGTGTTT ACACTTTGTA GGGATCAGGG TGTATTTGTT GAATTAAACA 002800 002801 AAATATTTTC AATGATGGCA AGTCTCTTGA CTTTTGAAAG CAAGTCAGAT TCCTTATAGC TAATGCTGGT GAGAAATGTT 002880 002881 AAATTGGAGA GATCCCTTTT GGGAGTGAAA CCAAATTGTA ACTATGAGGA GAAGATGGTC TTCTCATTGG CTCTTGATGT 002960 002961 AGCTCTGAAG GGAGTTCCAG AAGAGGAGCT CTCACAGAAT GTTGAGCCTG TGGGCCCAAG ACATTGACTT CGAAGGGTAG 003040 003041 TTCTCATTAG GATGTATAAG TAGTGGCTTG AGGCACCTTC TTATCATTTT TTGCATGTTA TTCTGATTAT TAAACTTCCC 003120 003121 CCAATGTCAT ATTCCATGAT GAGGGATTTC TGAACTCCAT AGTCCAGCGT TGTTGCTTTT CTCTCTTCTT TGCTACTGAA 003200 003201 AATTGCCAGC AGTACCGCCA TCAGCACACC AAATCTACCC CCACTTATGT TTGTTCTGCC CCATTTCCCA GGAGCAGCTT 003280 003281 CTAGCACATA TGTAGAGTAT CTGGCACCAC CTTAGCCCAG GGCTGCGTGC CTGATCAGTG GGGATTCTGT TCCCCCACCC 003360 003361 CCCAGACTGC AAGAGCTTCT TAAGAAGGAG CCCATATTCC CATTTGTAGC TGGAAAGCGG GTGAATGACA TGACATGGGG 003440 003441 CGCCTAGGAA AGATGATTAT TAGAGGAGTG CAGCGGAAAA AAATTTGCAC TCTTCTCCTT TTGGTTATTA CTTTCCAAAT 003520 003521 ATATTAACAA AAAGTTGATG CTTTTAACTT TATATTTTCA GAAAAGTGTT TTTAATTAAA AATATGTGAT AGGGACCAAA 003600 003601 TAAGTAAAGT ACATTTTTCT CCACTAAATT TGAAGTGAGG GAAAGAGGAG CCAAAGTAAG AGATTTTTTT TTAAGGAAAC 003680 003681 TTAATCTGAT TGTGAAAATC ATACATATGG AGAAACATCA GATCAGGCAA TAGAGTCAGA GGGTCATGAG CAATAGACGA 003760 003761 TGATGCGAGG CATTTGGGGA GCTTCCTGGA GGAAAATTAA GTTTTTTTCC TAGCAAACTA CCATGTCCTA CAAGAACTTG 003840 003841 GTTATATAAT GGTGCGTCTC TGAATCACTG ATTAAAACCA GTTGCTTCTG ATTTTAGTCA CAGGTTTTAC AAGTATTCAG 003920 003921 CTCTCCCTCA TGTTTCATTT CTTTTTTTAA GATAATCTAT CAACCTTTTT TAAATTTTAA AATTTTTAGA TGTAGAGTTT 004000 004001 ATAAGTAAAA TATATTTTTA GCCATTGTTC TGTTAGCTGA GCTGATGTGT TTGGTCTTAG AGGGCCTGAC TTCAGATACT 004080 004081 CTTTGTGATC TTGTAAGGGC TCTACACAAA CTTCATTATG TATGGTAAAT TTGTATTCTT ATGGATTGTA TATAGAATGC 004160 004161 TTTCGTTAGA AGTACATTCT ACTTCTGTAT GTCCCTTTGT AATCCGCAGT TGCTTACTCA GGGGTTTCAT AGTCATTTCA 004240 004241 TAAAAAATAA TTCACTAGCT GTCTAATGGT ATTTTAAGAC TGTTTATCTG TATCACAACG TCATTAGGAG TTCTTTCAAC 004320 004321 AATTCCATAA ATATACTGTT TACTAGACCT TCCCTGTAAA TGTTCCCAAT TCCCATCCTG TCTCAGACAG TCAATAGTCC 004400 004401 TGTGTACAGT GACTATTTGC ATGATTTCTC ATTGCACTGC TGCATTCAGG CACTCCAGGG CATGATTAAA CAGTCATTAA 004480 004481 CAGTGCCTCT CTGGTACAGT TGATGCATGC ATTGATCTTT CTTCTCTGCT GTTTTTATAT AGCCTTTAAT TAAAAGGAAA 004560 004561 AAAATACCAC TACTCTGCAA TGCAAAAGTC TTCAAAATTC TTTGTTTCCT GTATTAATCA CTTCTGTTCC AGAGTGAACA 004640 004641 AATGTTTTCA GCTAAGCTAT GTGAGAATGT AAGAATAATA TCCTGCTTGT TCTAAATAGT TCATATATTT AAAGTGTGGT 004720 004721 CAGTATTTCC TCCCTGTACC TTACAAACAG AAACCACCCT GGGATGGTTG ATACCCCTTA CAAAGTCGAT CTTACCCACA 004800 004801 CAGACTCCTG TGTATGCGTG TCTGTTTATA GGTGTATATG GAGTCAGTGT TGATAGGAAG GATGCTCTAG AAGTACTTCT 004880 004881 GTTGTTTCCT AGAAGGCTAT GAGCCAGTTC CATGGCATGT TTAATGTATA ATTCCCATGT ATCATGAGAA TTTCACTAGA 004960 004961 ATGTCATTAA ACAGCCCAAC TACCTCATGT GAAATTGGCT GTGGACAATC TGTGTCAGAT GAGAAATGTG TTCAGATAAA 005040 005041 TTTAATCTGG TTAATAGACT TAACAAATTA ATGTCTACAT AAAGAAGAAA CATGATAGAC CAGATGCCAA AGGCTAAAAT 005120 005121 GTACATAGAT TTCCTTGGAT TAATTTTTAA GTCACTGTTT AATTCCATGC CTAGTATTCT TATGAATGTT TGTGGTTTCA 005200 005201 TAGATTTATG CACTTTGAAT ATCTGTCACG TGCAGTGTTA ATGTTACCTG TTCTTGTCTC TCAGCATTTT GAATGAGCAT 005280 005281 CATAATCAGA GTAGAAGGCA AGTTAAACTA TAAAAGTGTC AAGTGGCTTG TTAACTTCTT AATTTAATGG ACCTTTACTT 005360 005361 AGAATATAAT ATGTTGGAGC CTCTTGGGAC CAACCGATGA GCGACAGTTT CATGTTTAGA TTTGTATTGT TTCTCTGTCC 005440 005441 AAGTCCTTAT TCTCTATCTT GTGGGGAGGG GTGGCAGGGG AGGGTTTTAC TTTTTTTGCA AAAATGTTTG AAAATATCTG 005520 005521 TCAGATTTTA TATTCGTTAG TTATAATAAA CTTATTTTTA AAGTAAAAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT119847_smProtein_404:664 |
Length | 87 |
Molecular weight | 9704.4357 |
Aromaticity | 0.0813953488372 |
Instability index | 59.8720930233 |
Isoelectric point | 8.73626708984 |
Runs | 15 |
Runs residual | 0.034796945505 |
Runs probability | 0.031837720073 |
Amino acid sequence | MTPPNCLPFTSMFPMHYLNWTSQVMIPRGIITPLQKQGLEVEGSVHSHIVFKQRSQIISK CDLDCLCIKVIWSACSNSRFPGLILA |
Secondary structure | LLLLLLLLLLLLLLHHHLLLLLEEEELLLEELHHHLLLEEEEEEEEEEEEEELLLEEEEL LLLLLEEEEEEEEELLLLLLLLLLLL |
PRMN | - |
PiMo | - |