NONHSAT119560
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119560 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1704 nt |
Genomic location |
chr7-:24211430..24222516 |
Exon number |
3 |
Exons |
24211430..24213020,24216428..24216520,24222497..24222516 |
Genome context |
|
Sequence |
000001 ctacaggcat gtacacccag ggatgcaagg tgcccagact gtgcaaagca atggcagctg catggagtcc agagagagca 000080
000081 cctggaggcc tggaaggctt ccaaaagaaa gtgATACTTC CAAACAAAAG GAACAGGAAG TTGTTGTCTT GTCTGTCTGC 000160 000161 CGTTCAAGAG GACTGAATAC GTTCCATTAA ATTCGCCTGC AAACTTTTCC TGAAGAGCCC AGCAAGCAGC GATGAAAATT 000240 000241 ACAGAGTGGC TCCCAGGCAC TTTAGTGGGT AATCAGCTGA AATTGAGCTG TTTTCCATAT TCTTTGCTGA TAATGCAAAA 000320 000321 GGAACCTTTA AAACAAACAG CTCCAAGTCA CCACACATCC TACAAGCTGA AAGGGCCCAT GTGGTCCACA CAGATGCTCC 000400 000401 AGCCACACAC CAAGCCCTGC TGCAGAGTAA TTGGTTCCCA CAGCTATCAG AGGTGAGAGC CAGCCGACTG CCTGTGCCTT 000480 000481 CACAAATGGC CAGGCTGAGC TAGACGGTTT ATGGGTCCAG GGCCAATCAT CGGGATAAAT TAGCTGTCAG GAAGTAAAAG 000560 000561 CAGCTCTAGG GAAATGGCTA GGTCTGTCTA AAATCTCTGA TTTTCTTCAC ACTAGGCGCA GTTTATCCTT GAATGGTGCT 000640 000641 TGCTCATGCT GTCCAGGAGA CAAGGACTCT GGGTTAAAGT ATAGGATTCA GGACTCTAGG TCTAAATAGA CCCAGGTGTT 000720 000721 AAATGCCCAA GATTATCGAC CAAAGTAGAA AAAAGATGTA GGGATTAGAG ATTCAGGAAA AGCTATTTCC TCTAAGATTT 000800 000801 TCATGGTTCT GAATGGAGCA TCTGGGGAGA AAATTCATTT GGGGGTTGGG TTGCTAAGAG GCCAAGAGAA GGGAAAATGG 000880 000881 AAAGGACGCT AGCGTGACAC ATGGTGGGAC ATGCAGGGAG GGGCAATGGA CCCAGGCTTG ATTCAGATGC CAACTTGCCA 000960 000961 TGCCCTGGCT ATGtgtaagc caaaaatgta tctgagacag gcctcaatca atttattttg caaggttaag gatcatgacc 001040 001041 cacggcctta ggagggcctg agaacatgtg cccaaagtgg ctgggttaca gcttggtttt gtatttttag ggagatataa 001120 001121 gacatcaatc aatatgtgcg aggtatacat tggattggtc tggaaaagtg ggacaacttg aagcacgggc ttacaggtca 001200 001201 taggtgaatt caaaggtttt ctgattggca agtggctgaa aagagttaag ttactatcta aaagcctgga atcaatagaa 001280 001281 aggagtgtct gggttaagat aaggggttgt ggagatcaaa gttcttatta tgtagataag tctcacagaa ggctgccctt 001360 001361 agaagcaata gatggcaaat gtttcctatt cagacctttc aaaggtccta gactcagcca ggcgcagtgg ctcacgcctg 001440 001441 taatccctgc actttgggag accgaggtgg gcggatcacc tgaggtcggg cgttcgagac cagcctgacc aacatagaga 001520 001521 aaccccttct ctactaaaaa tacaaaatta gccgggtgtg gtggcgcatg cctgtaatcc caactaggca gaggttgcag 001600 001601 tgagccaaga tcgcgccatt gcactccagc ctgggcaaca agagcgaaac tctgtctcaa aaaaaaaaaa aatatgctag 001680 001681 actctcagct aatctcttca ggat |
Predicted Small Protein
Name | NONHSAT119560_smProtein_8:175 |
Length | 56 |
Molecular weight | 6090.1571 |
Aromaticity | 0.0545454545455 |
Instability index | 63.76 |
Isoelectric point | 9.73126220703 |
Runs | 7 |
Runs residual | 0.0242424242424 |
Runs probability | 0.0406036288389 |
Amino acid sequence | MYTQGCKVPRLCKAMAAAWSPERAPGGLEGFQKKVILPNKRNRKLLSCLSAVQED |
Secondary structure | LLLLLLLLHHHHHHHHHHLLLLLLLLLLLLLLEEEELLLLLLHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |