NONHSAT119293
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT119293 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2254 nt |
Genomic location |
chr7+:16250111..16310229 |
Exon number |
5 |
Exons |
16250111..16250228,16276934..16277038,16301524..16301721,16305852..16305936,16308482..16310229 |
Genome context |
|
Sequence |
000001 tgtttccaga cactctgtgc aaagaacaga ggcaagcctc cagccaggag ctcatgaaat catgaactga ggcctcagtg 000080
000081 caatagctca tgaggaaatg aattatttca acagccagtt ctggaagttg gaagtacaag atcagattgc cagcatcatc 000160 000161 aggtactcat gagggccgtc ttccagcttg cagactgcca acttctcatt gtgtcctcag gtgagaaaaa tttggctcgt 000240 000241 ggtgatagtc ttggatatca ccttcatccc ctcggatgtt tgtagataat cctccattat atttggaatg aatactgtag 000320 000321 atatatgagg ttggactatc ctacgttttg cttgtttatg ggttttgcat cttgatgtct tcctgaagta ttcttCATGG 000400 000401 GGAATTTCCA AATCAACCAC AATTTGATAT CAAAGTAATG TCAAGTGCTT CTGACCCACT GCATTAAACG TGTGCTGAGC 000480 000481 AGTTGGTGGT AGAAGACATT ATTGTGAAGG CTGCTCACCA CCAATTTCAT CACTGTTGCT AACTCCAGCT CATCTAATCT 000560 000561 CTGCAACATC TGCTACCAGC ACCTTCTCTT GCCTCCTTTT GTGAACATAG TTTTTTCTTC TGGTTAGAAA ATCAGTTCGA 000640 000641 ACTTCTTGAG TTTTGTGTTT TAAACTCTTC TCAACTGTTC CGATGATTGA TGGATGGCCC AGAGGCGACC TCTTTATCTC 000720 000721 CAGCAACATA TTTGGCTGTT GGCCCGGTAG AGAGGTACTC CAGAAGCTTG CTGGTTCATC ATGCTCTCAT CTTTAACCAC 000800 000801 AACTATTTAT CTGACTCCTT CCATCTCCAC AGCACTGTGT GAGGGATCAG TGATAAGAGA CGGTGAAAGA CATGCGCAAA 000880 000881 TGGATAAATA ATAAGCAGGA TATGTAGAAT GACACAACAA TTGATGAGTA ATTTAGGAGA TCCAATAACT AAAAAAAAAA 000960 000961 AGACTGGGGA CAAGTTCATG GAAAGAGTAA TCAACTAAGC CTTATAACAT AAAATTGACA AATAGAGAAG GCATGCAATC 001040 001041 CAGTAGAATA GAGTGCAAAA GAGGTAGAAG ACTAATCGTT TCAAGACATG TTGAGCCACA ACAGCAATAA CATTGTGACA 001120 001121 AAAAACGTCG GTGTAGACTG CAGAAGATCT TCAATGACGG ATCAAGCTGT ATAGACTTTT TTTTACCCTC ATATACTGAA 001200 001201 TAGTCATTTA AGGTATACAG TGCCAACGTA AGAGAGAAAG GTAAACTTTT TTTAACACAA GTTGTAGGCC TTGGAAAGAA 001280 001281 GTTTTCCAGT AACAAGATAA CACGATAATG TACTGTGGTT ATAAGCTCAA AGTGGTATAT TTGATTCAGT GTTCCCAGAA 001360 001361 CCACCAAAAC CTTGGAACCA TTGTTTAGCT AAAGCTACTA GAACAACAGA ATAACCTACT CTGTGGCATT GTAAAGTAAA 001440 001441 ATTATACTAC ACACAAATAC TTGACATAAA ATACATTTCC AAACTCAATT ATTAGGGATA ACATAAGCAC AAAATGATGC 001520 001521 TTTGCAAACA TCATGTATCC TATAACTGGA GAAAAAAAAT TAATGACATG AAGTGAAATG ACTGAGTTCT GAAGCTACAT 001600 001601 CTCAATTTAA ATAGCATAAG CAATTTAGTA TACAACATTC TTCAAAATCA ATTGTTGAAG GTTAACTATA ATCTACATAC 001680 001681 AAAAACAACT TTGTCAACTT TTTGTACGGA TTTTCCTTCT AAACATATTT ACTTTATGTG TAAAATCAAA AAATTTCCTG 001760 001761 AGTTAAAGGC TAAGACTTGA CTTTATGAAT ACATGCCCAA AAATTGGTGG TGGCTGGTTT CTGTTTTTAT TTTGTAAGCT 001840 001841 TAGTATAATG GTTGTCCAGA ACTTGTAAGC AATGACCTCA TTTCTAAGCG GACAAGATGC AAAAGACCAT TTTTACAGAT 001920 001921 TAACCATCTG GTTCCTTTAG GAAGAGTAAT ATTTCAACAG GTTCCTGTAT TTCAAGAATA TAAATAATTA AAAAGATGAA 002000 002001 GATATGTGAA ATACACAAAG AAAAAAATAG AGAAAATAGC ATTTAAAGCA AATTATCCTA GCTCCCTCAA TTAATATTTT 002080 002081 AAAACCATGA CAATCAGtta ttaatataaa ttgttaattt tatttaataC AACATCAATA TAATTCATAC CATCTTCTTC 002160 002161 AACTAGGTGG TCTATCATTT TGGAGTTTCT TTCCACCTCT GGAGAATTGC TCAGGAAATC TGGCTAACAT ACCAAATAAA 002240 002241 TCAAATGGAT TTAA |
Predicted Small Protein
Name | NONHSAT119293_smProtein_689:841 |
Length | 51 |
Molecular weight | 5552.1518 |
Aromaticity | 0.1 |
Instability index | 47.79 |
Isoelectric point | 6.13421630859 |
Runs | 7 |
Runs residual | 0.0246783625731 |
Runs probability | 0.0233174350821 |
Amino acid sequence | MDGPEATSLSPATYLAVGPVERYSRSLLVHHALIFNHNYLSDSFHLHSTV |
Secondary structure | LLLLLLLLLLLLEEEELLLHHHHHHHHHHHHHHHHLLLLLLLLEEEELLL |
PRMN | - |
PiMo | - |