NONHSAT119293

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT119293

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

2254 nt

Genomic location

chr7+:16250111..16310229

Exon number

5

Exons

16250111..16250228,16276934..16277038,16301524..16301721,16305852..16305936,16308482..16310229

Genome context

Sequence
000001 tgtttccaga cactctgtgc aaagaacaga ggcaagcctc cagccaggag ctcatgaaat catgaactga ggcctcagtg 000080
000081 caatagctca tgaggaaatg aattatttca acagccagtt ctggaagttg gaagtacaag atcagattgc cagcatcatc 000160
000161 aggtactcat gagggccgtc ttccagcttg cagactgcca acttctcatt gtgtcctcag gtgagaaaaa tttggctcgt 000240
000241 ggtgatagtc ttggatatca ccttcatccc ctcggatgtt tgtagataat cctccattat atttggaatg aatactgtag 000320
000321 atatatgagg ttggactatc ctacgttttg cttgtttatg ggttttgcat cttgatgtct tcctgaagta ttcttCATGG 000400
000401 GGAATTTCCA AATCAACCAC AATTTGATAT CAAAGTAATG TCAAGTGCTT CTGACCCACT GCATTAAACG TGTGCTGAGC 000480
000481 AGTTGGTGGT AGAAGACATT ATTGTGAAGG CTGCTCACCA CCAATTTCAT CACTGTTGCT AACTCCAGCT CATCTAATCT 000560
000561 CTGCAACATC TGCTACCAGC ACCTTCTCTT GCCTCCTTTT GTGAACATAG TTTTTTCTTC TGGTTAGAAA ATCAGTTCGA 000640
000641 ACTTCTTGAG TTTTGTGTTT TAAACTCTTC TCAACTGTTC CGATGATTGA TGGATGGCCC AGAGGCGACC TCTTTATCTC 000720
000721 CAGCAACATA TTTGGCTGTT GGCCCGGTAG AGAGGTACTC CAGAAGCTTG CTGGTTCATC ATGCTCTCAT CTTTAACCAC 000800
000801 AACTATTTAT CTGACTCCTT CCATCTCCAC AGCACTGTGT GAGGGATCAG TGATAAGAGA CGGTGAAAGA CATGCGCAAA 000880
000881 TGGATAAATA ATAAGCAGGA TATGTAGAAT GACACAACAA TTGATGAGTA ATTTAGGAGA TCCAATAACT AAAAAAAAAA 000960
000961 AGACTGGGGA CAAGTTCATG GAAAGAGTAA TCAACTAAGC CTTATAACAT AAAATTGACA AATAGAGAAG GCATGCAATC 001040
001041 CAGTAGAATA GAGTGCAAAA GAGGTAGAAG ACTAATCGTT TCAAGACATG TTGAGCCACA ACAGCAATAA CATTGTGACA 001120
001121 AAAAACGTCG GTGTAGACTG CAGAAGATCT TCAATGACGG ATCAAGCTGT ATAGACTTTT TTTTACCCTC ATATACTGAA 001200
001201 TAGTCATTTA AGGTATACAG TGCCAACGTA AGAGAGAAAG GTAAACTTTT TTTAACACAA GTTGTAGGCC TTGGAAAGAA 001280
001281 GTTTTCCAGT AACAAGATAA CACGATAATG TACTGTGGTT ATAAGCTCAA AGTGGTATAT TTGATTCAGT GTTCCCAGAA 001360
001361 CCACCAAAAC CTTGGAACCA TTGTTTAGCT AAAGCTACTA GAACAACAGA ATAACCTACT CTGTGGCATT GTAAAGTAAA 001440
001441 ATTATACTAC ACACAAATAC TTGACATAAA ATACATTTCC AAACTCAATT ATTAGGGATA ACATAAGCAC AAAATGATGC 001520
001521 TTTGCAAACA TCATGTATCC TATAACTGGA GAAAAAAAAT TAATGACATG AAGTGAAATG ACTGAGTTCT GAAGCTACAT 001600
001601 CTCAATTTAA ATAGCATAAG CAATTTAGTA TACAACATTC TTCAAAATCA ATTGTTGAAG GTTAACTATA ATCTACATAC 001680
001681 AAAAACAACT TTGTCAACTT TTTGTACGGA TTTTCCTTCT AAACATATTT ACTTTATGTG TAAAATCAAA AAATTTCCTG 001760
001761 AGTTAAAGGC TAAGACTTGA CTTTATGAAT ACATGCCCAA AAATTGGTGG TGGCTGGTTT CTGTTTTTAT TTTGTAAGCT 001840
001841 TAGTATAATG GTTGTCCAGA ACTTGTAAGC AATGACCTCA TTTCTAAGCG GACAAGATGC AAAAGACCAT TTTTACAGAT 001920
001921 TAACCATCTG GTTCCTTTAG GAAGAGTAAT ATTTCAACAG GTTCCTGTAT TTCAAGAATA TAAATAATTA AAAAGATGAA 002000
002001 GATATGTGAA ATACACAAAG AAAAAAATAG AGAAAATAGC ATTTAAAGCA AATTATCCTA GCTCCCTCAA TTAATATTTT 002080
002081 AAAACCATGA CAATCAGtta ttaatataaa ttgttaattt tatttaataC AACATCAATA TAATTCATAC CATCTTCTTC 002160
002161 AACTAGGTGG TCTATCATTT TGGAGTTTCT TTCCACCTCT GGAGAATTGC TCAGGAAATC TGGCTAACAT ACCAAATAAA 002240
002241 TCAAATGGAT TTAA
[back to top]

Predicted Small Protein

Name NONHSAT119293_smProtein_689:841
Length 51
Molecular weight 5552.1518
Aromaticity 0.1
Instability index 47.79
Isoelectric point 6.13421630859
Runs 7
Runs residual 0.0246783625731
Runs probability 0.0233174350821
Amino acid sequence MDGPEATSLSPATYLAVGPVERYSRSLLVHHALIFNHNYLSDSFHLHSTV
Secondary structure LLLLLLLLLLLLEEEELLLHHHHHHHHHHHHHHHHLLLLLLLLEEEELLL
PRMN -
PiMo -