NONHSAT118941
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT118941 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2821 nt |
Genomic location |
chr7+:5862791..5894066 |
Exon number |
7 |
Exons |
5862791..5863157,5873158..5873199,5879580..5879706,5880321..5880487,5886397..5887232,5888195..5889147,5893738..5894066 |
Genome context |
|
Sequence |
000001 TGCTTTTACG CAGTGTTTTG AGGTGCAGGA CTGCAATGCC CGCACTTCCG GACCCCAGAC TCTTCCTACG GCGACTGACA 000080
000081 CCTCAGACAC GCGTTGTGGG GGGCGGCGCT CTGGCTCCGG GGCTGTGCCC AGCGCGAGCG TGGCCGGCAC CCACTTGCTG 000160 000161 CAGAGCCGGC ACTGCACTGG GGTTCTTGGG GGCGGCTCCT CCAGACGTCT CTGCGGGTTG TCGGGTGCTG CCGAGTTGGG 000240 000241 TTGGGGGACG CTACAGGTAG TGGGTCCGGA GCAGCGGCTG GCCCCTCATC TCACTGCCCT TCCTCGGACC CCACCGTCCT 000320 000321 CTGGAAGCTT GTGCAGGGCA CCTGCCACTG TGACCACCTG GACGCAGATA CCTGCTTTCC CACAACAGCA AGGAAGAACC 000400 000401 ATGGCCCAGG GGTCACTGTC ATTCGGGGAC GTGGCTGTGG GCTTCACCCG GAAAGAGTGG CAGCAGCTGG ACCTGGAGCA 000480 000481 GAGGACCCTG TACCAGGATG TGATGCTGGA GAACTACAGC CACCTGCTCT CTGTGGGCTG AACTGTCTGC TTGCTTGGAA 000560 000561 GGCCCAGCTG GCTCAGCACA AATCCTTTAA CCGTTTCTCC CCAAGAGGGT GTCAAGTCAG CAAACCAGCT GTGATCTCCA 000640 000641 GTTTGGAGCA GGGGAAGGAG CCATGGATGG AGGAGGAAGA GATAAGGACG TGGAGCTTCC CAGAAGAAGT TTGGCAAGTT 000720 000721 GCTACCCAGC CAGATAGCCA ACAGCAACAC GAAGACCAAC ATTTGAGCCA TACGTTTCTA GACAAGAAAG ACTGGACCGG 000800 000801 AAATGAGCTT CATGAATGTA ACGAACTTGG AAAAAAACTC CATCAGAACC CAAACCTCCT TCCATCAAAA CAGCAGGTCC 000880 000881 GCACACGTGA CTTGTGCAGA AAGAGTTTGA TGTGTAACCT GGACTTCACT CCTAACGCCT ACCTGGCGAG GAGGAGATTT 000960 000961 CAGTGCGACG GCCACGGAAA CTTCTTCTCT GTTCGAAACT TGAAACTCCA CCTTCAGGAG CGAATCCACG CGGAGGTCAC 001040 001041 CAGTGTGGAA GTGCTTTAAG CTGTGACGAG GGAGTTCCTG CAGCTCAGGG AGCCAGTAGT GAGAAACCCC ACGAATGCAC 001120 001121 GAAGTGTGGG AAAGCCTTGT GCTGCAGATC GGACCTCAGG GTACATCACG GGGTCCACGC GGGGGAGAAG TCCTCTGCGT 001200 001201 GCAGTGAACG GGGGAGTGGT TTCAGGGAGA AGCTTTGCCC TGACAAACAG GGAACTCACA CAAAGGAGAA ACCCGCTAGA 001280 001281 GACAGCAGAA GTGGTAAAAC GATCTTCCGG AAGACACGCC TGTGTGTCCC GGGCACAGTT CACGCCGGAG CGAAGCCTTA 001360 001361 CAAGTGTTGG GAGTGTGAGA AAACCTCCCA CAAGTCGCGC CTCATCGAGC ACCTTCGCTC CCACACGGGG GAGAAGCCCT 001440 001441 GCGGCTGCAG GGAATGCGGA AAGGCCTTTT TCCAGAAGTC ACACCTCATC CTGCGTCAGA GGACTCACAC GGGGGAGAAG 001520 001521 CCCTGCGACT GCGCGGAGTG CGTGAGCCAC TTTAGCCAGG ATATACTTAA TTATAAAGAC AACTGTGGAT ATGAAGTTTT 001600 001601 TTTTTCTTTT GAGATGAAGT TTTACTCTTG TTGCCCAGGC TATGGGAAGA AATGAAATCA TTACGACTAA CAGATCTAAA 001680 001681 AAGCGTGAGA ACATCCCAGA GGGACGCAGG GGTGTGTTCC AAGTGTGCTA CAGACAGATA ATTTTTATTT TTGTGTTGCA 001760 001761 CTGGTGAACA GAACATAATT GTGAATCTGT AGACATACAT ACCATAATAT ATAGAAGATC TATGGATACT TTCTATGCTA 001840 001841 AATTATACCC TTCTGTGTTT GTGATATAGA ACTGGAATAA GATGAATATA TTATTAAAGC AGAGAGGCCC ACTGCAGCAG 001920 001921 CACATACCAT TTCTTCTGTT TGTCATCACG TATTACAGAG CCCCTGAACT TGGAAGCTAA CAATTTCATG ACATCTGATA 002000 002001 ACTCACAGTC AACTAGTTTA TAAGTTATAT TTTTGGCTGG GCTCGGTCGC TCACACCTGT AAACCCAACA CTTTGGGAGG 002080 002081 CTGAGGCAGG CAGATCACAT GAGGTCAGGA GTTTGAGACC AGCCTGGCCA ACACGGTGAA ACCCCGTCAC TGAAAAATAT 002160 002161 AAAAATTAGC TGAGCATGCT GGTGATTTTC TGTAATCCCA GTAATCCCAG CTACTTGGGA GGCTCAGGCA CGAGAATTGC 002240 002241 TTGAGCCCAG CAGGCAGAGG TTGCAGTGAG CTGAGATTGT GCCACTTCAT TCCAGCCTGG GCGACAGAGC AAGACTCTGT 002320 002321 CTCAAAACAA GTTATATTTC TATATTAGGA CTCCATTTTC TGGCAATACG GTGGACCGTC TAAAGTGAAA ATCACCGGGG 002400 002401 CAGTGGCTCG TGCCTGTGAT CTCAGCACTT GGGAAAGTCA AGGTGGACAG GTCACTTGAC CCCAGGAGTT CAAGACCAGC 002480 002481 CTGGGCAACA CGAAAGCTGA CTTCATGAGA CCGAGGATCT CGTTCGTTGA TCGATGCTAC ATATTCAGCA TGTTAGATAA 002560 002561 TGAGGTTGGT GAGATTGATG AAATCCCGCC CACCAGGGCC GACCCACAAA GAGCCACTTT ATGAAGAACA TGCTCCTGAA 002640 002641 CTCCACTCCA CAACCAGCTT TTGAAAAGAA AAATCTGAAA AAATTTGACC TCAGTTAAAC TGGTCCAAAT GCCTGAGCAT 002720 002721 AACCAAAATC TTTCCTCATT CACTCTTCAC GTGGACCGTG TTTAATTTGG TTGCTGGTGA TCATATTTGT TTTAGTAAAG 002800 002801 GCTGTCACTC TATCTTGGGC G |
Predicted Small Protein
Name | NONHSAT118941_smProtein_35:259 |
Length | 75 |
Molecular weight | 7668.9795 |
Aromaticity | 0.0675675675676 |
Instability index | 49.1364864865 |
Isoelectric point | 11.1419067383 |
Runs | 11 |
Runs residual | 0.00599868160844 |
Runs probability | 0.0459122223828 |
Amino acid sequence | MPALPDPRLFLRRLTPQTRVVGGGALAPGLCPARAWPAPTCCRAGTALGFLGAAPPDVSA GCRVLPSWVGGRYR |
Secondary structure | LLLLLLHHHHHHHLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLL LLEEELLLLLLEEL |
PRMN | - |
PiMo | - |