NONHSAT117951

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT117951

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

6820 nt

Genomic location

chr6_qbl_hap6-:1548086..1587827

Exon number

5

Exons

1548086..1553288,1555160..1555653,1556821..1556926,1574937..1575150,1587025..1587827

Genome context

Sequence
000001 CGGGGCGGCA AAACGTCCGC CCGGGCCCGA GGCGGGCGGA GGCAGCTGTG GTTACGTGCG GGGGGCCGGT GACGCAGTCG 000080
000081 CGGGGCGCTG GGACGCGGCT TGCGGAGCCG GCCGGCGAGC GCAGGCCCCA GGCTCGGGCG CGGCGGCGGG ACAGCACCTA 000160
000161 CCTTCCCGGC TTCGGGTCCG GGAGTGCGGG GCGCGGAGCC GCCGGAGCGC TGCCTCCCTC CTTCCTCCTC CCCTCGCCCC 000240
000241 CGCCCCGCGG CGCGACACAC AATACTCGCC GGAAGCGGAA GCCGCGCCGA GGCTCGTGTC AGTGGAAGCT GGGGTGTcgg 000320
000321 cgggcggccg cggccgggTC TAGTGGTGCC TGCGGAAGAA GGAGGAGGAG GGCTGGCGAT GAGAAGCAGC AGGGGGAATC 000400
000401 AAGGGCAAGA AGGGACCCAG AGGGGCAGGT GGCTGAGATG CTGGCGTCCA GGTGACCCGA GGAATCCTCT GGAGATACAG 000480
000481 GCCCGCGCAT GCGCGTGCTC GAGCGCTGAA GCCCATTGCC CGCAGGGCGC TGGACTGGCG CCCCGGCCGG CGAGGCTGTC 000560
000561 TAGTCCAGGC TCCAGGCCCC GGCTCTGGCC AGGCGCCGCC GCCTCCCGGT GCAGCTGAAA GTCGACGAAG AGGGCGGGGC 000640
000641 GGGGGCGGCT TGTGGACTTC CACACTTTTC CTCTCTTCGG GCCAGTCTGG GGAGAGGGTG GCTAGCTGTG GCGGCGGCCA 000720
000721 ATTACGTGGC GGACCTGCGG GGCTAAGCTG GCACGTCACT TCCGACTAGT GGAGTTTTTA GCCTTTTAAC ATTCAAGGAT 000800
000801 TAGGTAAAAG TCTTGCAGTG AAAAACCCGA GGACCCTTAC CGCAAGTGTC TTTTGCTCCC AGCTACTGAT ACTGGATTCC 000880
000881 ACTCGTGATT CTCCCTTTCT TAGCGCATTC ATGATATAGA CATCAGTCTC TGAGCTGGAG GAGGACAAAG GCAGCGGTCC 000960
000961 TGTGAATTCT ATGCTCTAGC TTGGGTTAAG GGATTTGGAA TTGCACTTGT TTCAGAGagc tccctctttg cccactagca 001040
001041 gggcattagc tggtgctgaa gacagtggct gcttggcgag cctggatctc caagtgaccc cctcagcaac tcctgatgaa 001120
001121 cagGACTGAA GCCAATATTA AAGCAAGTCA ACCAAAGGTT CTCTGGTGTA GACAAGACAG CAAAAGGACA GACTACCTTG 001200
001201 TGGAACCTAG CATTGTTCTC CTTCTGCAGC ACTAAGTAAC ATTTGTTCTC CGTTAAGATC TTTGCAAACC ACACACAAGA 001280
001281 ATTGCTGGTC ATCCTGCCAA TAGATGCTGC TCACAGAACC AAATTTCCTG TGCTGAATTG TCACTCATGG GCTTGAGAGT 001360
001361 AGGAGACTGG AGACCAAGGT GGCTAGAATC CAGTTGGGCC TGATGTCTCC CTGTTGAAAG GGCTCCTTGT GGAATGAATA 001440
001441 GCACATGGCT CCTGTGGTGG ATCTGATAGT GGCATAGCAC CAAGTGATGC AGGCCTGCCA GGGGCCACAG ACACAGAAGA 001520
001521 TGCTCCCGGG GTCCCCCATG TACTCCAGAC ACACTGCAGG CCACCTCTCC CAGCAGGTTG CCAGTCATGG GCCCCATCAT 001600
001601 CATGACTTCT GTCCAAGGTA CTGTGTGCAG AAATGTGATT GAGATTCAAG TCAGGGCCTC TCTGCCCTTT TCCCTCCAGA 001680
001681 AACAAAACCA AGATAATTTA TCCTGAACAC GGTGAAAAAA GGAAGGGAGG GAGGAGAAAA AGTCCGGGTC TCACCTGGGA 001760
001761 TTCTCTGTCT CCTGCAACAT GAAGGATTTA GCCTGGGAGG AGGTGGTGAG AACTCTGGGA GAGAAAAAAG AAGGAAAGAA 001840
001841 TAGTTTTACC CATGCTGAAG TTAATTTAAA CCTTCACCTA GAGAAGCAAA AAAAAAAAAC CCACACTTTC CCATTTTGTG 001920
001921 CCTCCCTTCC TAGAGTTTTA GCCAAAGGTT TAGCTAAGTA ATTGGTTTTA CCAGCGCACT CACTCCTCCT ATCCCAAGTC 002000
002001 TGTTTGACTC CCTCCCCATC ATCCTCCTCA CCTCTTTTCA GGCAGGGTGG GGATAGCAGC AGGAGGAGAT TTTGGGAGCC 002080
002081 TGGCAACTCC TGCAAGGACC GCAGGACAGC CCCTCTGTGG GGATGCGTGG TGCCCCATCT GCCGCCCTTC TGAAGAATGC 002160
002161 ACTGCCTTCA CTTTTTACTG TGTTAGAGTC CATCCAGACT GTTCTATCCA AAAAAGTTTC TTTTTCCCCC ACAGGCAATC 002240
002241 AGGAAATGAT TCCTTTCCCG ACTGCTTCTG TCTAGTGCCT GGGAATCTTG AGTCAATCCC TCAGTAAGTC AGTGACTAGG 002320
002321 GAAATCCCTC TCTGAGCCTC CCAGTTCATG TTGCTTAGGG AACCTGATAT TTTCGTGAAA CCTGCCTACA CATGGGCAGC 002400
002401 CCAACAGCAG AACAAATGGT GGTGACCAAA GTGAACAAAG AAGTATAGTT GTGCCAGCTT CGTAGTTGCC CATGTGGACA 002480
002481 AGTCAGCAGG ATCAGGACAC GAGGAAGAGT AAATGTGAGA CAGTCAATGT GACTTCTGCG ATAAACAGAT TTTTAAACCC 002560
002561 CGAAATTTTG CAAAATTTTG GTGAAACCTG AACTTTCTTC GTTGCATATA CTGGCACTAT CTGTACCATC ATACAACTGT 002640
002641 CTCACATTAA AGCTATTTTT CTTGGGCACT GATGAGTAAG GTTGGTATAA GTTCCTCAGA TCAACAAAAA CCCATTTTCC 002720
002721 TGTAAGTCTT ACATTTAGTA TTTAAGGAAC TAAAACTTAA ATACATTTTG TGAAATGGTT GACACTTCAC TGATAATGAT 002800
002801 TTATTGCTTG GATTAATAAA TTTTCCAAAA GTTGTCTTAT GTAGAATATG GTTTGCAACC AGCAGAACCA TTAATCTATA 002880
002881 CTGCAATGAT ATGCACTATG TATAATTGTT TAAAAGCCTC TACTTAATGA TGTAAAATGC TCTATTTAAT TACACATTTG 002960
002961 GGTAAACTGT ATACTAACAT CTGATGGCAT TTTTCCACTG TTTGTTGCTT TTTTCAAATA CTTTATTGTA CAAAGCTGTT 003040
003041 CTTAATATTT TTCAAGTTTT TTTCTTTGAA TTTTGCTAAT GTTTTCCTTG AATTATGAGC ACTGACAGAA TGTGCTTAGC 003120
003121 ACTTTTGGCT ATTCACACAG CTTTTGAGCA TGATTTGCAT CCAATATTTA CATTGCTAGC AATAATAAGC CATCTGTGAG 003200
003201 TTTTGTCAAA AGTTATTGGG GATTTTTTAA ATTTTAGAAA TGCAAATTAT TGTTTCTTTG AACTAACTCT TATGCAGTTG 003280
003281 CAAAGGCATT TCCAGTTGTT ATAGTTTGTG TACAATATCA GGTGTTCCAG ATTATGATTC ATTATTAATA TCATTGCTTC 003360
003361 CTTGTTCCCT CTGAGGTCCA GAAGATTCAT GTTTACAATA TTTAGAAACA ATGTTAAAAA GGTATCCAAA GTTTGTCACT 003440
003441 TTATTATTAG TTTGTTCTTA ATATTCTGTT TAAGTTTTTG AATTCATAGA TATCAAAACG CTGCACAATT ATGATTTCCA 003520
003521 CAGGAATAAC AACACACTAA CAATAAGAAC CAAAAACAGC AAATAGGCTG CCTACAAGTT TTGACAATAT TAGGATAATG 003600
003601 ATAATGACAG TTTTTCTAAA TCTCACAGTA AAGAATGCAG CAACCCAGCA ACACTGctac ctgtggcctc aggctgcagt 003680
003681 gtcagctctt ccctgggtct ccagcctgcc agtctaacct gaaaattatg tacttgccag cccccacagt cacgtgagtg 003760
003761 aactGGCCCA GGCTGGTCAC CAGGGTCAGT TTCTCTGTGT GTCATTAATT CATTCAGTCT TCAGCAGTCT CTTTGGAGCT 003840
003841 GAGATGTACC TACCATCTGC CTTTTGGGTG CTTAGGGTGG AGAACCAGAA AAGTATAACC TAGTGTGTAT CCTCAAAGAG 003920
003921 CTAACAATAT GGGGTGGTAC CTATAGGTCT GGAAACACTT TACTGACTCT GTGAGGCATA CCAGGAGACG TCAGAGAACA 004000
004001 GTCCCTCCTC AAATGCCAAA TGAGATGCAG AAGAAATAGT TTGCTCAAGT TCATGGGCCA GATATCCCAG Tggtcaggga 004080
004081 gtttcatgaa tgagatggaa ctttgcatgg aacccgaggg atgtgtatga tttgagtaga tgaagaatat gagactttcc 004160
004161 aagcagctag aagttaggga gcagcaagat gtgtggtggg attgagcaca gttggttcag aggaTAGACT GCAGTTTTAA 004240
004241 TAATTTGTAG TAAATATCTC CCAACTGTTT GGCACTATTG GAGCAAGTTC TTGAATGCCA AATGAAGGCA TAAATCAGTA 004320
004321 AGAGGCATAA TAAAAGGCTG AGCAGTGCTT GGCTTTTTAC GAACTGATCC TGATAGGAGC AGCTGTTCAA CAAAGTTGCC 004400
004401 AGGTCACCGT Tacatagtcc ctgccttcta ggggctcact gcctactggg agagacagTC TGAAAGTTGG TGGAGCATGT 004480
004481 AACTGTTGGA TGAGGAGTTT GAGCCTGTGG ACTGTGGGAC CCCCGAGGAG GGTGTGGCTA CTCTAGGCAG AACAATCCCA 004560
004561 CAGTTTATTT ATATTTAACC TTGAAATTCA TTAGAGGATT TTTCAGCAGA GGTTTGGTAC TTGTTAATGT TAAGGTTTGC 004640
004641 ATTCTCTAGA ACCTCAAGGA AAGCTGTACC GTGCATAATG TACCCTCTTA TGTTAATGTT GTGTACTGTG ATCCTGTTTC 004720
004721 AGGGACTTGC ACTTAGGAAT CTGTTACAGT GAGCACAGAA GCAGACCTGT GGGCTCATAG TCTTCACCCC CCACCCATAT 004800
004801 ATACAAGATG AACAGAGTGG AGGTTAAACA ACTTGACTAA ACAACACAGT TCATGGTAAA GCCCAAGACT GTACCTGCCC 004880
004881 ATCCACTGCC TTTTCCATGT ATCCTGGAAC TGAGCATAGA CCTCTTCCCA GGCAGAGCTG ACAGCAAGTA AAGGAGATCA 004960
004961 TAATCAGGGG ACCAAACAAC TTTGTCTAAA GTGTGAATGT CACCTAAGGA GAAGCTGTGA GATCAGAAGG GTGGGGCAGA 005040
005041 GGAGCAGACA CCATGAGAGA GAGTCCTTGG GGGTACATCT GCCAGACTGA CACTGTCTGG CCTGGGCAGT GGAGGGGCTA 005120
005121 GCAGGAACCA CAGGTACTGG TGGTGTGGCT ACTACCGTTA CAACTGCCTG TGCTTGGACA TGGACCCTCT GCAATATGCG 005200
005201 GCAGTTTCAT TCATTGCCCC CTACATTCTA CACCAAGTAG AAATGGAAGG CAATTGGATA CTTCACAGAC AAGATCTAAG 005280
005281 TGGAGAAGGA ATGCGTCCTG TGGCTGCAGA GATCCTTGGA GCTTGGAGGG GAGAGCTTGA GCCCCACTGA TGATGACCTC 005360
005361 CCACAGCTCG CCAACTCAGC CCTCCCTAAG TCCCCATCGG GGGCCAATTC TCACTCTGGG GTTGGGGGGA CTCCACCATA 005440
005441 GCTCATCCAT CATAGGGATG TTGGTATCTA CTGTGGGTTG GGTAGGGCCG ATGTGCTGAG GATGGCTCCC CCACAAGCAA 005520
005521 GAGATGTGGA TTTGGGGAGC TTCCCATCTT gtgttgaagg aacataactc agaataataa gagccaacta taacaaaccc 005600
005601 acagccaaca tcatactgaa tgggcaaaag ctgcaggcat tccccttgaa aagtggcaca ggataaggaa gccctttctc 005680
005681 accactccta ttcaatatag tgttgaaagt cctgatcaca gcagtcaggc aacagaaata ataaagggca tccaaatagg 005760
005761 aagagaggaa gtcaaactat ccttgtttgc agacagtatg attctatatc tagaaaaccc catagcctca gcccaaaagg 005840
005841 tccttcatct gataatttca gcaaagtttc aggagacaaa atcagtgtac aaaaatcact aacattccta tacacagtcg 005920
005921 ccaagccaag agccaaatca ggagcacaat cccattcata attgccacaa aaaagaataa aatacccagg aatgcagcta 006000
006001 accaaggaag taaaggatct ctacaatgag aatcacaaac gctgctcaaa gaaatcagag atgacacaaa caaatggaaa 006080
006081 aactttccat gctcatggct aggaagaatc aatatcatta aagtggccat actacccaaa gcaatttata gattcaatgc 006160
006161 tattcctatc aaactatcaa ttacattttt cacagaacta gaaaaaactt aaaattcata tggaaccaaa aagcctgagt 006240
006241 agtcaaggca atcctaaaca aaaagaacaa aggtggaggc atcacattac ctaacttcaa actacagggc taccatgacc 006320
006321 aaaacagcat ggtactggta caaaagcaga cacacagacc agtgggacag aatagagagc ccaaaaataa ggccacaaac 006400
006401 ctacagccat ctgatcttca acaaagttga caaaaacaag caatggggaa aggtctccct attcaataaa tggtgctggg 006480
006481 ataactggct ggccatatgc agaagatcgt aactggaccc cttttactat gtacaaaaat taagatggtt taaagagtta 006560
006561 aaacccaaaa ttataaaaat cctgaagata acttaggcaa taccattctg gacataggaa ctggcaaata tttcatgatg 006640
006641 aagacaccaa aagcaattgt aacaaaagca aaaatggaca aattggattt aagagctttt tcatagcaaa ataaacaaca 006720
006721 gggcagacaa tctaccaaat gacagaaaat ttttgcaaac tatgcatctg acaaggggct aatatctagc atctataagg 006800
006801 aatttaaaca cagttacagg
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Predicted Small Protein

Name NONHSAT117951_smProtein_6314:6511
Length 66
Molecular weight 8177.2855
Aromaticity 0.184615384615
Instability index 57.4692307692
Isoelectric point 9.94635009766
Runs 13
Runs residual 0.0497115384615
Runs probability 0.048061636297
Amino acid sequence MTKTAWYWYKSRHTDQWDRIESPKIRPQTYSHLIFNKVDKNKQWGKVSLFNKWCWDNWLA
ICRRS
Secondary structure LLLEEEEHHHLLLLLHHHHLLLLLLLLLLEEEEEEEEELLLLLEEEEEEEELEEHHHHHH
HHLLL
PRMN -
PiMo -