NONHSAT117571

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT117571

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1880 nt

Genomic location

chr6_mcf_hap5+:800373..804535

Exon number

4

Exons

800373..800551,800916..801010,802019..802135,803047..804535

Genome context

Sequence
000001 ACTGCCCAAC TGCCACTGCC CAGCCTGATG GCTCCACATC TCAGGAGTAG GCTCTGATTC CTTGGGGCCC CAGGAGCCTC 000080
000081 TCAGGAGTCT ACATCCCAAG ATGTTCTAAC TTCCAGAGTC TCCAAGCCCA TCAAGAGCAA GTTTTGCTAA AAGTGTTCTG 000160
000161 AGAGCTTATG AAGCACATGG ACAAGGAAGG GTTGTGCATC CGGCTTTCCA CCTTAAACTG GTTTCTATGG TGCTTCATCG 000240
000241 ATGAGATAAG GATGCATAGG AGACCCCAGG CCAGGAGTTC CTTCAGGACA CACTGTCCTA GGCCTGGGCC CTGGAGGAGG 000320
000321 ACATGGTGAT GAGGCACCCT GAGGCCTCCA TGGGGGAACT GAGAAGCATG CACTGTGACC TGCACACCCA GCCAAACCTG 000400
000401 AGCAAGCACC CCCACCACCC AGGCCTCTGC AGATATCCCC CAGCATTGAG ACCCTCCCCA AGGGGATGGG CTGCTTCTCC 000480
000481 CTGGCCCACA GCCCAGCTCC AGCAGCCCAT GGGTATAGCC CTCCTGAAAC AGGAGCCTCA TCCTCCCTCA CCCTCACCTG 000560
000561 GCTATGCTGT ACCCAAGGCC AAAGCCCAGA GGCATAAGGG AGCTTCTGCA GAGCCCAGGA CAGCAGGCTG CTCTCTGGGG 000640
000641 GCCCTGGGGA CTCAGAGTGT GGCCAGCCCA TCCCCAGCTC AGGATAGACC ACAGAGTGCT TGGTGATTCC TGCATTGGAA 000720
000721 CTCCCTCTCT AAGCTCCCCA TGGACCTGGA CCTCAGAGGC CTGTGGTTTT CACAGTAGAG CTTGGAGCAG AGATGCTAGG 000800
000801 CCCCTATCAC TTCCATATGT GTCCTGGACA CCTCTAAGAT CATAGGACTG GCCTAGCCCC CAATACCAGA CACTGCCCAG 000880
000881 CCCCCTGATA GCCCAGAGGT AGGGCCAGAG ACAACTCTCC TGCATGTGAT GCCTACAGCT GATCACTCTT GGCAGACAGT 000960
000961 GAACATCACG GCCCAGAAGG AGCCAGGGCA GCACTTGGCA AGCTGCCCCA AAGCCCCAGA GAGCTCCTTA GACATGGAAA 001040
001041 GTCAATACTG ATGGGGAAGC TGGACACTTG GAGGCCACTG GAGGGAGGGG TGAGCATGGT GTCCCCACAG CCCAGGCCAC 001120
001121 CCAGCAGCAT GCCCTGCATC CATGGTCCCA ACCTGTAGGG CAGAACCCCC CTCTCAACGC ACAATTCCTA GACCCAGAGG 001200
001201 GCCCTAGCCC AGACTCAACC TGAGCCCTGA AAGGGAAGGG GCACCAGGGG TGCCTTGGGG CCTCCAGCAG CAGCCAAGAT 001280
001281 ACACAGGAGA TGGAGCCCCC TGTGGCCCTG GCCAGAACTA GTATTTGGCT TAAGGCGGAG CAAGCCCCCT TGGAGCACTG 001360
001361 CGTACATACC CGGGGCCTAT GTGTGCCTGG CAAGGCCAAG CTGATGATGT TACCAAGCTC AAACTACCAC TGGCCACCTT 001440
001441 GGTGAGGGTG GGGCAGAAAC ACGTGGACCA GCCACCAACC TCATCCATTC AAGGAAGCAG AAATGGTCAG GCTCCTGCAG 001520
001521 GATAAGTGGC CACCACCAGA CCACCAATGG GGCAGAGTTC TGAGGCCCAA GCAGATGGCA CTGGGGCCCT GCTTCCAGGG 001600
001601 TCCACAATCT GCTCCAGGAC ACAAGACTGA AGAAAACTAA GCAAATGAGA GTCCAGGAGG CTGGATCCCT CATCTGCCAT 001680
001681 TCTTGGCAGT TGCATTTTGT GGTCAGAAAA AGTCAGGAAA CTTGGCTCTA CTCACTGCAG GAGGCTCCAA GGTGGGACCA 001760
001761 GAGCTTCCAG CATAGATTCA ACAATGCCTA AGAATGCCTC TTCTTGGGGA AAAGGACCCC TTCCTTGGCC TCAAAGCCCC 001840
001841 CACTTATTTT GATTAAAGCA CAATAAAGTC TTTGTTGTTA
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Predicted Small Protein

Name NONHSAT117571_smProtein_563:844
Length 94
Molecular weight 10585.015
Aromaticity 0.10752688172
Instability index 59.7569892473
Isoelectric point 10.7290649414
Runs 14
Runs residual 0.0196136997212
Runs probability 0.030850177909
Amino acid sequence MLYPRPKPRGIRELLQSPGQQAALWGPWGLRVWPAHPQLRIDHRVLGDSCIGTPSLSSPW
TWTSEACGFHSRAWSRDARPLSLPYVSWTPLRS
Secondary structure LLLLLLLLHHHHHHHLLLHHHHEEELLLLLEEELLLLLLEELLEELLLLLLLLLLLLLLL
LLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -