NONHSAT116903
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT116903 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1064 nt |
Genomic location |
chr6_dbb_hap3-:1187371..1188434 |
Exon number |
1 |
Exons |
1187371..1188434 |
Genome context |
|
Sequence |
000001 CACAAAGCTA CTAAGTTTGA CTTTCGCAGA CAATGTATCT GTGACTCCCG CTTGTTTTTT ACATTTACCT TCATTCCACA 000080
000081 GCCCTGAGTT ACTGGGTGAG TCCAAGACAT CTCCTCAATA TAAAGTAGCA CACTGTGTTA CTATATGTTG CAACCGGGAG 000160 000161 CCAGTACAGA CTTTATTCAC CTCACAGTTG CAAATGTTCA ATGCAGTCAC AATGCCCCTC AGCAGTGCTC ATGCGCTGCC 000240 000241 TGTTTTTAGG AAGTATTCAC GTCTAAGTGG TGTGAATATC TTATAGGAAC ACTTAGTATT TTTAAAACCT GATTAATTAA 000320 000321 AAAAAATTAG TTTCTAGGCA GTCCCAAATA TAGTATTAAA GGCCAACTGC AAAGAAGGAA CACTAAGTAT TTTTTAAACC 000400 000401 TTATTAACAT AAAAAACATT AGTTTTTAGG CAGTCCTACA TTAGGTATTA AAGGCCAACT GCAAAGAACA CTGAGCGAGG 000480 000481 CTCTGTAGAT GGATGTAATA AAAATCTATA AAACAATGTG TTTAAACCTA AGAATTCTAC TGCTTTCCAA TTCCTTCCCT 000560 000561 CTGCTCCTTT TCCTAACCTC CTGCTTCTCC AGCCCTTCCC TCTGTCCCTT TCATCCCTCA GGCCCTCCTC TCCCCTTAGT 000640 000641 CCCCACCACC CTGTCACTTC TAAATTGTGG CTCTAGCATT GTCCCATTAC CTGCTACGTG Actgttctct ccacagtggc 000720 000721 cctgctcctg tgagtcagag tgtgtcattt cctcacctaa aacactccag tggctccacc tcGGTCTTGT GAAGCTTCTA 000800 000801 GAATGTCAGG CACATGAGCA TATGAGGGCA Tacctggttc atcttaggca ctaaattaat ttttgttgac tgaatgaatG 000880 000881 AAATATGAAG GTATTAAATT GCATCACAGA AAGTTATAAA ATGTAAAACA CTGAAAAATT AAGAAATATT TTATTTTATG 000960 000961 TAACTAGTGT GCATATCAAT TCATTCCGAG TCTGTTGAGC CTGtgtatga attttataag attgcataac aaattatcac 001040 001041 aaacattgac tttaaacaac accc |
Predicted Small Protein
Name | NONHSAT116903_smProtein_488:700 |
Length | 71 |
Molecular weight | 7545.0821 |
Aromaticity | 0.0714285714286 |
Instability index | 60.3528571429 |
Isoelectric point | 8.48992919922 |
Runs | 9 |
Runs residual | 0.0162659123055 |
Runs probability | 0.0495004808731 |
Amino acid sequence | MDVIKIYKTMCLNLRILLLSNSFPLLLFLTSCFSSPSLCPFHPSGPPLPLVPTTLSLLNC GSSIVPLPAT |
Secondary structure | LLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLHHHHLL LLLEELLLLL |
PRMN | LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLHHHHHHHHHHHHHH HHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooTTTTTTTTTTTTTT TTTTiiiiii |