NONHSAT116840
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT116840 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
800 nt |
Genomic location |
chr6_cox_hap2+:4492897..4495846 |
Exon number |
3 |
Exons |
4492897..4493187,4493963..4494094,4495470..4495846 |
Genome context |
|
Sequence |
000001 TGAGGGCTTT GGGCCGGCGG TCCCAGGGCA GCCCCGCGGG CCCGTGCCCA GGGCGCAGGA GCAGCCGGGT TGGCCTAAGG 000080
000081 GACCTTAGTG CCGGGCGGAA AGGGGACTTT GGGTTGGGGA TTCATGGGGG GAGCCCATCT GGAGCTTGTC AGGGGAGCGA 000160 000161 GCGCGGGGAC CTGGACTGGG CTGAGCATGG AGTGAGGAGG ACGAGAGCAG AGAGACCCCC GGGACTTCAT CAGGCCTGGC 000240 000241 AGCTGACTGC ATGTGGGGTG AAAAAAGGAA GCCACAGGAC AGCGCACAAG GAAAGAGGAA AAAAATGAAG GGAGGAGGAG 000320 000321 GAGGAAGCTG GGGAGATCAC ACCTTTGATT TTCTTGTTCC TGGAAAGTGA AAGGAAGTTC ACCTGCTATG AGTGAGAAGG 000400 000401 TGGACACACT GGGTGGGGAT GAGgctggag tgctgtggcg ccatcatgac tcactgcagc ctcaacctcc tgggctcaag 000480 000481 tgatcctcct gcctcagcct cccatgtagc tagaactaca gatacatgta ccaccatgtc tggctaattt atttttcttt 000560 000561 ttagagatgg gttctcacta tgttgcccag gctggtctcg aaaccctggg ctcaagtgat cctcacgcct cagcctccca 000640 000641 aagtgctaag attataggca tgaccaccat gcctggccTT TTCTGCCTTC CGAGAAGGAA AAAGGTACTG GTGGCAGAGA 000720 000721 TCCAAAAGAA AAGTTGCCAG TGGCAGTGTG GAAATTGACC TGAGAACAAC AGAACAAGCT GGGGCACAAA TGCAAAGATG 000800 |
Predicted Small Protein
Name | NONHSAT116840_smProtein_566:757 |
Length | 64 |
Molecular weight | 6748.7918 |
Aromaticity | 0.047619047619 |
Instability index | 52.226984127 |
Isoelectric point | 9.30157470703 |
Runs | 12 |
Runs residual | 0.0455134434726 |
Runs probability | 0.0389507154213 |
Amino acid sequence | MGSHYVAQAGLETLGSSDPHASASQSAKIIGMTTMPGLFCLPRRKKVLVAEIQKKSCQWQ CGN |
Secondary structure | LLLHHHHHHHHHHLLLLLLLLLHHHLLLEEEELLLLLLEELLLLLEEEHHHHHHHHHHHH LLL |
PRMN | - |
PiMo | - |