NONHSAT116533

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Basic Information

Transcript ID

NONHSAT116533

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1905 nt

Genomic location

chr6_cox_hap2-:1210563..1233001

Exon number

6

Exons

1210563..1211101,1212326..1212456,1221922..1222392,1222507..1222842,1231111..1231388,1232852..1233001

Genome context

Sequence
000001 AGGAAATTTC TGGTGGGCCT TCGCGGCTCC GCTGGGTTGG CAGCCGCTTG AGCCACTGCG AGGAAAGCAA AGTCTGGGCC 000080
000081 ATGGAGATGA GCCTAGTCCT GCTGTTCCTG ATCCGCACTG CCCTTTTTGC ACCCCAGGGA GCTGCTGCTG acggcgcctc 000160
000161 cctctgtcgc caaagttgga gtgcagtggc gcggtctcgg ctcactgcaa gctccgcctc ccggattcaa gtgattcccc 000240
000241 tgccttagcc tcctaagtag ctgggattac aagtgcccac caccacacct agctaatatt ttgtatttta atagagactg 000320
000321 ggtttcacca tgttgaccgg gatggtctca atctcctgac ctcgtgatct gcctgcctaa gcctcccaaa gtgctgggat 000400
000401 tacaggcgtg agccaccaca cctagctgGA AGAGGAGATA AATatatgaa ggtgctgttt ggcacagaat ttaataggga 000480
000481 agaaagagac agtataactc accagtgctg ggtctcatca tcctgcaatt tcagaacaac tatgaataca aaaagaattt 000560
000561 taaaatccca gtcctgccta gaaaggggaa gtcatctcta aatatggtgg ccctggggca GCTGGCCTCC CTGCCAGGCC 000640
000641 TCTTCCATGG GGGCCCTTTC TGCAGTGACT GTGGTTTCTT CCCATTTTAC TCTGTCCTGT GTCCTGACTG AAGCGACAAG 000720
000721 GTGTGTCTGC AGCTGTGCTC ACACCTGGAG GAAACCTCAA TGGTCACATC CTCTTTCCTG TGTCAAGAAG CATCGTCCGG 000800
000801 GGAGGTGAGA AGAAGACAGT CCTCCCTAGA ATTGAAGAAC CAGGGAGAAC CAGATGGGCT GGGCAGGTGG GTTTTCACCT 000880
000881 GGAACCTGGA GGATGAGCAA TGACATCTCT CCACCCTGAG CTCAGCCCCG GCATCCACCT CCTGGGCTCA TGAGCAGTGC 000960
000961 AGTGGTGCCT CCTAGTGGTC TCTGCTCTTC CTTTTCCAGA TCAAGCACAA ACCTGAGATC CAACTGTCCC TCTTATGCGC 001040
001041 CTGGGTTTCT TCACTGGACA CCAGTATGAG TCAACTTTCC TGTAAAGCAG AACAAGCACG AGATTGGACC ATGTTAGAGG 001120
001121 AGGAATGGTG TCATCTCCAC TTCTGGAGAG ATCCCTGTCC CCGTGTTTGG GGGAAGGACC AAGCCTCACT CCCATGCAGA 001200
001201 GAAGAGGCTC TGACTGTAAC TGCACCTGTG GAGAGAGGAT TGCGGCCTGT TGGCAGAAGA GTAGTGTCTT GGGCCCCAGC 001280
001281 TGACCTGATG AATATCAATA TCCAATGCCC TGTAATGAAG TCATGTGTGC ACATATCATC ACTTCTGCAT GCAGTCTCAT 001360
001361 GGGAAGATGG TGCCAAGAAC GAAGAAGGAA GCTCCTGCCC CTCCTAAAGC CGAAGCCAAA GCGAAGGCTT TGCAAGGCCA 001440
001441 AGAAGGCAGT GTTGAAAGAT GTCCACAGCC ACAAAAAAAA CAAGATCCAC ATGTCACCCA CCTTCCGGCG GCCCAAGACA 001520
001521 CTGTGACTCC GGAGGCAGCC CAAATATCCT TGGAAGAGCA CCCCCAGGAG AAATAAGCTT GACCACCATG TTATCATCAA 001600
001601 GTTTCCGCTG ACCACTGAGT AGGCTGTGAA GAAGATAGAA AACAACAGCC TACTTGTGTT CACTGTGGAT GTTAAAGCCA 001680
001681 ACAAGCACCA GATCAAACAG GCTGTGAAGA AGTTTGTGAC ATTGATGTGG CCAAAGTCAA CACTCTGATT CAGTCTGATG 001760
001761 GAGAGAGGAA GGCATATGTT CGACTGGCTC CTGACTACGA TGCTTTGGTT GTTGCCACCA AAATTGGGAT CACCTAAACT 001840
001841 GAGTCAAGCT GGCTAATTCC AAATATATGT ATATCTTTTC ACCATTAAAA GAATCTTAAT CTCTC
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Predicted Small Protein

Name NONHSAT116533_smProtein_1304:1525
Length 74
Molecular weight 8575.4593
Aromaticity 0.027397260274
Instability index 91.4945205479
Isoelectric point 10.8561401367
Runs 9
Runs residual 0.0208572691118
Runs probability 0.0357023690357
Amino acid sequence MPCNEVMCAHIITSACSLMGRWCQERRRKLLPLLKPKPKRRLCKAKKAVLKDVHSHKKNK
IHMSPTFRRPKTL
Secondary structure LLLLHHHHHHHHHHHHHHHLHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL
EELLLLLLLLLLL
PRMN -
PiMo -