NONHSAT116324

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT116324

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2696 nt

Genomic location

chr6_apd_hap1+:800667..804829

Exon number

2

Exons

800667..800845,802313..804829

Genome context

Sequence
000001 ACTGCCCAAC TGCCACTGCC CAGCCTGATG GCTCCACATC TCAGGAGTAG GCTCTGATTC CTTGGGGCCC CAGGAGCCTC 000080
000081 TCAGGAGTCT ACATCCCAAG ATGTTCTAAC TTCCAGAGTC TCCAAGCCCA TCAAGAGCAA GTTTTGCTAA AAGTGTTCTG 000160
000161 AGAGCTTATG AAGCACATGG AGTTCCTTCA GGACACACTG TCCTAGGCCT GGGCCCTGGA GGAGGACATG GTGATGAGGC 000240
000241 ACCCTGAGGC CTCCATGGGG GAACTGAGAA GCATGCACTG TGACCTGCAC ACCCAGGTGG GCTTCAGCAC CAAGTCTCCT 000320
000321 CCTGTGTCAC CCTGCGGGGC AGTAAATAGT GGGAAGTGCC CAGACCTCAC CAGCCCTGCT CCCTGGGCCT TCCTCCAGCC 000400
000401 CCTCCTCTCC CTCCTCCTCT AAGAAGCTTC TGAAACCAGG CTGCCTGAGC CTAGGGCAAA AGCTGACCTT GGGTTTACTG 000480
000481 GACATGCCTC AGAGACAATG AGACGTGAGC AAGACTCTTC CAAGCCCCTC CCCTGTACCC TCCTGCTCTC ACTCCTGAAA 000560
000561 GCCCCAGAAG GACACTGGAG GGGTCAGATC CATCTGTGCA AGCCCACAAC CACACCTGTG AGTACCAGCA GCCCTGGAGA 000640
000641 GCAGCAGGGG GCCTTCACTC CTGAGCACCC CTCCAAGGGC CTAAAATCAG TGTCAGAGAC CCTAAGAGAA TCTAGGGAGA 000720
000721 GGGCATAGGT GAAACCCTGG CCCAGAGCCA GAATTGATTG CTCAGCTGAG TGTGGGAACA GTCCAGCCCT GGCATGGAGA 000800
000801 TCCCCCAGAG GAGTGGAGGG TGTCTCATCC ACTGTGGAGA TAAGCCCCCA TATTGCGTGG CAAAGGGGCT AGGTAACAGT 000880
000881 TAAGGCCTCA TCCATCTGAG CTCTGAATCA AGGCTAAAGC CCAGGCTAAG CAGCCCTGGG GCAAGAGTGT GAGGCAGGAA 000960
000961 GACTGAGTCA GCCTGAACCC TGGGGGCTGT CCCTGGAGTG ACTTGAGCTT CCCTGACAGC TTCCCCACTC TAGGCTGCAC 001040
001041 ACACACCTCG CTCTGGGAGT AGCAGCCTGC AGGAGTGTCC TCAGCATTAG ACCAGGGAGA CCACACGGGG ACCCTGAGGA 001120
001121 CTGCAGGGAC CCAGGTCTGT GGGGTCCAGC CTGGCAAAAG CAAGATGTTC TCAATGGAAA AGCTGACCAA ATCTGCTTTC 001200
001201 CTTTCAGCCA AACCTGAGCA AGCACCCCCA CCACCCAGGC CTCTGCAGAT ATCCCCCAGC ATTGAGACCC TCCCCAAGGG 001280
001281 GATGGGCTGC TTCTCCCTGG CCCACAGCCC AGCTCCAGCA GCCCATGGGT ATAGCCCTCC TGAAACAGGA GCCTCATCCT 001360
001361 CCCTCACCCT CACCTGGCTA TGCTGTACCC AAGGCCAAAG CCCAGAGGCA TAAGGGAGCT TCTGCAGAGC CCAGGACAGC 001440
001441 AGGCTGCTCT CTGGGGGCCC TGGGGACTCA GAGTGTGGCC AGCCCATCCC CAGCTCAGGA TAGACCACAG AGTGCTTGGT 001520
001521 GATTCCTGCA TTGGAACTCC CTCTCTAAGC TCCCCATGGA CCTGGACCTC AGAGGTCTGT GGTTTTCACA GTAGAGCTTG 001600
001601 GAGCAGAGAT GCTAGGCCCC TATCACTTCC ATATGTGTCC TGGACACCTC TAAGATCATA GGACTGGCCT AGCCCCCAAT 001680
001681 ACCAGACACT GCCCAGCCCC CTGATAGCCC AGAGGTAGGG CCAGAGACAA CTCTCCTGCA TGTGATGCCT ACAGCTGATC 001760
001761 ACTCTTGGCA GACAGTGAAC ATCACGGCCC AGAAGGAGCC AGGGCAGCAC TTGGCAAGCT GCCCCAAAGC CCCAGAGAGC 001840
001841 TCCTTAGACA TGGAAAGTCA ATACTGATGG GGAAGCTGGA CACTTGGAGG CCACTGGAGG GAGGGGTGAG CATGGTGTCC 001920
001921 CCACAGCCCA GGCCACCCAG CAGCATGCCC TGCATCCATG GTCCCAACCT GTAGGGCAGA ACCCCCCTCT CAATGCACAA 002000
002001 TTCCTAGACC CAGAGGGCCC TAGCCCAGAC TCAACCTGAG CCCTGAAAGG GAAGGGGCAC CAGGGGTGCC TTGGGGCCTC 002080
002081 CAGCAGCAGC CAAGATACAC AGGAGATGGA GCCCCCTGTG GCCCTGGCCA GAACTAGTAT TTGGCTTAAG GCGGAGCAAG 002160
002161 CCCCCTTGGA GCACTGCGTA CATACCCGGG GCCTATGTGT GCCTGGCAAG GCCAAGCTGA TGATGTTACC AAGCTCAAAC 002240
002241 TACCACTGGC CACCTTGGTG AGGGTGGGGC AGAAACACGT GGACCAGCCA CCAACCTCAT CCATTCAAGG AAGCAGAAAT 002320
002321 GGTCAGGCTC CTGCAGGATA AGTGGCCACC ACCAGACCAC CAATGGGGCA GAGTTCTGAG GCCCAAGCAG ATGGCACTGG 002400
002401 GGCCCTGCTT CCAGGGTCCA CAATCTGCTC CAGGACACAA GACTGAAGAA AACTAAGCAA ATGAGAGTCC AGGAGGCTGG 002480
002481 ATCCCTCATC TGCCATTCTT GGCAGTTGCA TTTTGTGGTC AGAAAAAGTC AGGAAACTTG GCTCTACTCA CTGCAGGAGG 002560
002561 CTCCAAGGTG GGACCAGAGC TTCCAGCATA GATTCAACAA TGCCTAAGAA TGCCTCTTCT TGGGGAAAAG GACCCCTTCC 002640
002641 TTGGCCTCAA AGCCCCCACT TATTTTGATT AAAGCACAAT AAAGTCTTTG TTGTTA
[back to top]

Predicted Small Protein

Name NONHSAT116324_smProtein_1379:1660
Length 94
Molecular weight 10613.0681
Aromaticity 0.10752688172
Instability index 55.0322580645
Isoelectric point 10.7290649414
Runs 15
Runs residual 0.0303663878933
Runs probability 0.0252075605017
Amino acid sequence MLYPRPKPRGIRELLQSPGQQAALWGPWGLRVWPAHPQLRIDHRVLGDSCIGTPSLSSPW
TWTSEVCGFHSRAWSRDARPLSLPYVSWTPLRS
Secondary structure LLLLLLLLLLHHHHHLLLHHHHEEELLLLEEEELLLLLEEELEEELLLLLLLLLLLLLLL
EEEHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -