NONHSAT115946

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT115946

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

4015 nt

Genomic location

chr6+:163307016..163311030

Exon number

1

Exons

163307016..163311030

Genome context

Sequence
000001 TTTCCAATTT TTCATTAGTT GTAAGTTCTT TCTGATGCAG AATCTAGTCC AGATCACACA TTACATTTAT TTGCCTCCTG 000080
000081 AGTAGCTGGG ATTATCATGC CCAACTAATT TTTGTATTTT TAGTAAAGAT GGGGTTTCGC CATTTTGTGC AGGCTGATCT 000160
000161 TGAACTCCTG ACCTCATGAT CTACCCGCCT TGGCCTCCCA AAATGCTGTG ATTACAGGCA TGAGCCATTG CCCCCGGGCT 000240
000241 TGCAAGCTCT TTTTTAACTT CTCTTCCTGG ACAAGTCTCT GTTGTGGCTC TCCTTCAGTG TCTCTGGCCA GTCATTCTCA 000320
000321 GACTGGGAAA GCCAGGTCCT TCTCCTCCTT GGCCTTCTCA TCATCCATCT CCTTCCTCCT GGGCCACTCT TCTGTCCTCA 000400
000401 TTTATTCCGG GTTTTTCCTT TTCAAAAACC TGTTTCATTC TTATGTATCC TGTGGACTTG ATGAAATCTT ACATGACTTC 000480
000481 ATACAATCAC ATGGCACGCG TCTCCTGGAA AGTTCAGAGA TCTGTCTGTT CATTAACCCC CTCCAGTGGG ACTCTCATTG 000560
000561 ATGTGGCAGC AGCAACATGA GGAATAGAAT CAGAAAACAT TTCCTGTAGC CATTTGGCTC ATTGGAGTGA AGGAATTTTT 000640
000641 TTTACAGTTT TCAAGTTATG CTGTTTTCTA AAGTTTTGAC CATTTATTTT TATGTCACAG AGATGAAATT GATTTTGAGG 000720
000721 TCTTATTTTT GTTACACAAA TCTAGAGGAG AGTGTGTCAG TATCTCTTCT AAGTATTAGA CACATTCATT TGCTTTTTCC 000800
000801 TGGAGGAAAA CATGCAGGAA CAAGAACCCA AAATTCTAGA TATCATTAAT TTTTTAAATT TAAATAATTT CTAAGAGAAA 000880
000881 AGAGACGTTA TCCATACAAT AATTATGCAA CTCCAGTTAT TATTATTATT AGTATTATTT TTGAGACAGA GTCTCACCCT 000960
000961 GTTGCCCAGG CTGGAGTACA GTGGTGTGAT CTCAGCTCAC TGCAACCTCT GCCTCTCAGG TTCAAGCGAT TCTCCTGCCT 001040
001041 CAGCCTCCCG AGTAGCTGGG ATTACAGGCA CATGCTACCA CACCTGGCTA ATTTTTTGTA TATTCAGTAG AGACGGGGTT 001120
001121 TCACCATGTC TGTCTTGACC ATGAGGCCTC ACCACCATGT GCTCACCATC ATAAGGCCAG GCTGGTCTTG AACTCCCTAC 001200
001201 CTCAGGTGAT CTGTCCACCT TGGCCTCCCA AAGTGCTGCA ATTATAGGTG TGAGCCACTG CGCATGGCCC CCAGTTATGT 001280
001281 TTGAATGGTT GCTTTCCATC TTGTGGGTGT GTTCTTTAGC AATGACCAGG CTGAAGCAAG TTCCTCCCAG ATAGTTCCAT 001360
001361 CTTTGCAAAT TAAGAGAAAG ACAGCTAGTG TGGATAATGG AAGGGTGACT TCCAATGTAT TCTCTGGAAT TTTAGTGAAA 001440
001441 AAATTAATAG TGGGTACAGC TCTGCACAGA TGGGCTCCCT TGGTTCATGT GACCACAGAT GTTTTGGTAT CGTATTGCAT 001520
001521 GTGATTTCTG TAGCTGTTAA GGTATTCCCA TAGTAATACT TATGTGGACA CGTTCTTGTA AAACTTCCCA CCAAAATTCA 001600
001601 GAGTGAAAAA ACTAACATAT CAGGGTGAAA TTATCTCAGG ATGCAATATG AAGTCTTAAG AAGTATAACT ATTCATTTCT 001680
001681 TGTCTAAATT GAACTTGAAT CTTGAGATAA TCCCAGAAAG TTTTGACCTC GCCCTGCCTC CGTCCTTAAA TACATTCCCT 001760
001761 TGAGTTAGGT TGAGCCATCA GACTGGTTTG CAGAGTGCCC AGTCCCAAAG GCTGGGCAAG AGACCGGTCT TTGGTCTTCA 001840
001841 TGACTCAGCA TCCAGTCTCT GAGGGTGGGT GAGGCTCAGT CCTCAGTCTT GGTGACTGTC TTTGTCTGCT TGTGCTGCTA 001920
001921 TAACAAAATA CTGGGTAATT TATAAACAAT GAACATTTAT TTCTCCCGGT TCTGGGGGTG GTAAGTCCAA GATCAAGTTC 002000
002001 CCAGCAGGTT CAGTGTGTGG TGAGGGCTAC TCTCCGCTTC CAAAGATGGT GCCTTGTTGC AGCAGCCTCA GGAGGAGATG 002080
002081 AACGTCGTGT CCTCATATGC TGGTGAGCAT GGGCTGCGGG GTCTCGTCCT CATCTGGGGT GTCCGTACTG GTGAGGGTGG 002160
002161 GCTGGGGTGG TCTCATCCTC ATCTAGGGGG TTTCTGTAGC AGTGAGGGTG GGCTGCGGGG TGTCATCCTC ATCTGTGGGA 002240
002241 TGTCCGTGCT GGCCATCACC GAGTTGAGCA CTTCCCATCC TGGAGTCTTG GCCACAACCC TCACATACAG ACAAAAGTCG 002320
002321 ATTTGGGTCC AGCGGCTCTT TCAGCACGTG GTGCCAACCT AAGACATGAG GCCTCCTGCT GGAGCTCCAG GAAACTCTAG 002400
002401 TCTCTGCCCT CCTCTTGCAT CCGTAGGATC GCTGGGCTGC TGCTGGGGCT TGGCAATCCT CAGAGACCTT GGACTTGTCT 002480
002481 GCTTGGAGAT AAGGCACAGT CATTTCATCT CCAACTGCTG CCAAGCCCTG CTGGCTGGCA GGACATTTGG ACTCTCTCTC 002560
002561 CCTGGGTTTT CCCAGGACAG AGGTTACAGA TCCTTCAGCT CTTAGGCTGA TGTCACTTCC ACTCCTTGAT CTCAGCTTAC 002640
002641 AGGAAAGGTG GAGAGAAAAG GCGATCAGAG CAGAGTCCCT TTCTGAAGAC ACACTTGGTC CTCCCCTGCC TGGGTCTGCA 002720
002721 GGGGTCAGAA GCATTTCCAT AGCAGTCATT TTCATACAGG CCCTGGCTCC CATTAGGCAA CCTTCCTCTT TGGAAAACCC 002800
002801 AATAGCCAGG AATTTAAAAG GCAGGACTCT TTTCTCTTAA TTTTCTCCTG AAAAACCCTT CCCTGAGGCA ACCAGACCCA 002880
002881 GCTGCTGCCC AAATAGGAAG GAAGGTCAGA ATTGACAGGA ATTCACAAGG AAAGAGAGCA TAGGTTTATA TTTCAGGGTA 002960
002961 TCAGTCATGC GGCCATGGGA TCAGATTTGG AACTCTGTGA TTAAGCTAAT TTCTGGCATT AGGCTCAATC CCTCTGTGAC 003040
003041 AGAGAAGTGT AAAATTGTCA AAAAATGAGC ATTATTTTAG CAACACAATC CTGACACTAT GAGAGGGAGA AAACTGGGTT 003120
003121 GGATCAAGTA TTCATCTTAC CCAGTAAGCC ATTATAACTC AGGCTTTTGA TGCATATTTT GGGCTGTTAT TCATCAAGGT 003200
003201 GGTCAAAGTC ATGAAGAACT GTATGTTATT CTATAATATA CTTTCTATAT TAAGTCTGTT CAGATGATAC CACATTTTCT 003280
003281 ACATCACTGA TCCATTAAAA AAAAATCTTT CTTTGAATGC CTCTTGCCAC TAATCAGGCT ATGATATTCA GTTTTTGAGA 003360
003361 TAGGTTAACA AATTGAAAAC CCAGCTTTAA ATGTTATGGT AGTTTAAAAA TAGAAGTGTT TTACTTCAAA CTATTCTGAG 003440
003441 TTGCTGCTTA GAGCAATAAA AATGTACTTT ATAGCTTGTT AACCTAGATC TCAGGGATAT CCGTTCTACA ATAATGGAAG 003520
003521 TAGATTTGTT TACTGTCTAA ATCAGCCTTG TCAGAACAAT GCTCTCCAGT GACTTTTTAA AGTCAGAGTA AACCAATACA 003600
003601 TTCTGTCTTC TGTGATTATA CAGCATGGCA TGGTGTTCTC TTGTATACTT GTGTTTTGAA TATGAGTAAC AGTCTTTAGC 003680
003681 TGACTTTAGC ATTTTGGAGA AATCTGTATA TGTGGCTTCT ACTTATATAA GCATCTACCA AATATATTAA CTGAGTTTTA 003760
003761 TAGTCCGGTT ATTTTCCATT TCAGTTACTT CCAAGACTCT TCGATATGCA CTTACATACT TCATACTCAT TAAATGAAGA 003840
003841 TATTGGAAGC TACCTTATTT TGAGGTACAG CATAAAGCAC CAGCAGAGCT TAGTTACTAC ACATTTTAGC ACAATCTCCT 003920
003921 GTAAGTTACT GCATGCTGCA AAAGAGCTGA ATGAGTCAAC AGACATTGTA ATGGTGATGT GTAACTCATA ACCTGAAATA 004000
004001 AACTATGTCA AATCG
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Predicted Small Protein

Name NONHSAT115946_smProtein_2609:2839
Length 77
Molecular weight 8294.545
Aromaticity 0.0394736842105
Instability index 60.7013157895
Isoelectric point 9.94757080078
Runs 8
Runs residual 0.036146400484
Runs probability 0.079292527822
Amino acid sequence MSLPLLDLSLQERWREKAIRAESLSEDTLGPPLPGSAGVRSISIAVIFIQALAPIRQPSS
LENPIARNLKGRTLFS
Secondary structure LLLLLLLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLEEHHHHHHHHHHHLLLLLLLL
LLLHHHHHLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL
LLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiii
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