NONHSAT115946
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT115946 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
4015 nt |
Genomic location |
chr6+:163307016..163311030 |
Exon number |
1 |
Exons |
163307016..163311030 |
Genome context |
|
Sequence |
000001 TTTCCAATTT TTCATTAGTT GTAAGTTCTT TCTGATGCAG AATCTAGTCC AGATCACACA TTACATTTAT TTGCCTCCTG 000080
000081 AGTAGCTGGG ATTATCATGC CCAACTAATT TTTGTATTTT TAGTAAAGAT GGGGTTTCGC CATTTTGTGC AGGCTGATCT 000160 000161 TGAACTCCTG ACCTCATGAT CTACCCGCCT TGGCCTCCCA AAATGCTGTG ATTACAGGCA TGAGCCATTG CCCCCGGGCT 000240 000241 TGCAAGCTCT TTTTTAACTT CTCTTCCTGG ACAAGTCTCT GTTGTGGCTC TCCTTCAGTG TCTCTGGCCA GTCATTCTCA 000320 000321 GACTGGGAAA GCCAGGTCCT TCTCCTCCTT GGCCTTCTCA TCATCCATCT CCTTCCTCCT GGGCCACTCT TCTGTCCTCA 000400 000401 TTTATTCCGG GTTTTTCCTT TTCAAAAACC TGTTTCATTC TTATGTATCC TGTGGACTTG ATGAAATCTT ACATGACTTC 000480 000481 ATACAATCAC ATGGCACGCG TCTCCTGGAA AGTTCAGAGA TCTGTCTGTT CATTAACCCC CTCCAGTGGG ACTCTCATTG 000560 000561 ATGTGGCAGC AGCAACATGA GGAATAGAAT CAGAAAACAT TTCCTGTAGC CATTTGGCTC ATTGGAGTGA AGGAATTTTT 000640 000641 TTTACAGTTT TCAAGTTATG CTGTTTTCTA AAGTTTTGAC CATTTATTTT TATGTCACAG AGATGAAATT GATTTTGAGG 000720 000721 TCTTATTTTT GTTACACAAA TCTAGAGGAG AGTGTGTCAG TATCTCTTCT AAGTATTAGA CACATTCATT TGCTTTTTCC 000800 000801 TGGAGGAAAA CATGCAGGAA CAAGAACCCA AAATTCTAGA TATCATTAAT TTTTTAAATT TAAATAATTT CTAAGAGAAA 000880 000881 AGAGACGTTA TCCATACAAT AATTATGCAA CTCCAGTTAT TATTATTATT AGTATTATTT TTGAGACAGA GTCTCACCCT 000960 000961 GTTGCCCAGG CTGGAGTACA GTGGTGTGAT CTCAGCTCAC TGCAACCTCT GCCTCTCAGG TTCAAGCGAT TCTCCTGCCT 001040 001041 CAGCCTCCCG AGTAGCTGGG ATTACAGGCA CATGCTACCA CACCTGGCTA ATTTTTTGTA TATTCAGTAG AGACGGGGTT 001120 001121 TCACCATGTC TGTCTTGACC ATGAGGCCTC ACCACCATGT GCTCACCATC ATAAGGCCAG GCTGGTCTTG AACTCCCTAC 001200 001201 CTCAGGTGAT CTGTCCACCT TGGCCTCCCA AAGTGCTGCA ATTATAGGTG TGAGCCACTG CGCATGGCCC CCAGTTATGT 001280 001281 TTGAATGGTT GCTTTCCATC TTGTGGGTGT GTTCTTTAGC AATGACCAGG CTGAAGCAAG TTCCTCCCAG ATAGTTCCAT 001360 001361 CTTTGCAAAT TAAGAGAAAG ACAGCTAGTG TGGATAATGG AAGGGTGACT TCCAATGTAT TCTCTGGAAT TTTAGTGAAA 001440 001441 AAATTAATAG TGGGTACAGC TCTGCACAGA TGGGCTCCCT TGGTTCATGT GACCACAGAT GTTTTGGTAT CGTATTGCAT 001520 001521 GTGATTTCTG TAGCTGTTAA GGTATTCCCA TAGTAATACT TATGTGGACA CGTTCTTGTA AAACTTCCCA CCAAAATTCA 001600 001601 GAGTGAAAAA ACTAACATAT CAGGGTGAAA TTATCTCAGG ATGCAATATG AAGTCTTAAG AAGTATAACT ATTCATTTCT 001680 001681 TGTCTAAATT GAACTTGAAT CTTGAGATAA TCCCAGAAAG TTTTGACCTC GCCCTGCCTC CGTCCTTAAA TACATTCCCT 001760 001761 TGAGTTAGGT TGAGCCATCA GACTGGTTTG CAGAGTGCCC AGTCCCAAAG GCTGGGCAAG AGACCGGTCT TTGGTCTTCA 001840 001841 TGACTCAGCA TCCAGTCTCT GAGGGTGGGT GAGGCTCAGT CCTCAGTCTT GGTGACTGTC TTTGTCTGCT TGTGCTGCTA 001920 001921 TAACAAAATA CTGGGTAATT TATAAACAAT GAACATTTAT TTCTCCCGGT TCTGGGGGTG GTAAGTCCAA GATCAAGTTC 002000 002001 CCAGCAGGTT CAGTGTGTGG TGAGGGCTAC TCTCCGCTTC CAAAGATGGT GCCTTGTTGC AGCAGCCTCA GGAGGAGATG 002080 002081 AACGTCGTGT CCTCATATGC TGGTGAGCAT GGGCTGCGGG GTCTCGTCCT CATCTGGGGT GTCCGTACTG GTGAGGGTGG 002160 002161 GCTGGGGTGG TCTCATCCTC ATCTAGGGGG TTTCTGTAGC AGTGAGGGTG GGCTGCGGGG TGTCATCCTC ATCTGTGGGA 002240 002241 TGTCCGTGCT GGCCATCACC GAGTTGAGCA CTTCCCATCC TGGAGTCTTG GCCACAACCC TCACATACAG ACAAAAGTCG 002320 002321 ATTTGGGTCC AGCGGCTCTT TCAGCACGTG GTGCCAACCT AAGACATGAG GCCTCCTGCT GGAGCTCCAG GAAACTCTAG 002400 002401 TCTCTGCCCT CCTCTTGCAT CCGTAGGATC GCTGGGCTGC TGCTGGGGCT TGGCAATCCT CAGAGACCTT GGACTTGTCT 002480 002481 GCTTGGAGAT AAGGCACAGT CATTTCATCT CCAACTGCTG CCAAGCCCTG CTGGCTGGCA GGACATTTGG ACTCTCTCTC 002560 002561 CCTGGGTTTT CCCAGGACAG AGGTTACAGA TCCTTCAGCT CTTAGGCTGA TGTCACTTCC ACTCCTTGAT CTCAGCTTAC 002640 002641 AGGAAAGGTG GAGAGAAAAG GCGATCAGAG CAGAGTCCCT TTCTGAAGAC ACACTTGGTC CTCCCCTGCC TGGGTCTGCA 002720 002721 GGGGTCAGAA GCATTTCCAT AGCAGTCATT TTCATACAGG CCCTGGCTCC CATTAGGCAA CCTTCCTCTT TGGAAAACCC 002800 002801 AATAGCCAGG AATTTAAAAG GCAGGACTCT TTTCTCTTAA TTTTCTCCTG AAAAACCCTT CCCTGAGGCA ACCAGACCCA 002880 002881 GCTGCTGCCC AAATAGGAAG GAAGGTCAGA ATTGACAGGA ATTCACAAGG AAAGAGAGCA TAGGTTTATA TTTCAGGGTA 002960 002961 TCAGTCATGC GGCCATGGGA TCAGATTTGG AACTCTGTGA TTAAGCTAAT TTCTGGCATT AGGCTCAATC CCTCTGTGAC 003040 003041 AGAGAAGTGT AAAATTGTCA AAAAATGAGC ATTATTTTAG CAACACAATC CTGACACTAT GAGAGGGAGA AAACTGGGTT 003120 003121 GGATCAAGTA TTCATCTTAC CCAGTAAGCC ATTATAACTC AGGCTTTTGA TGCATATTTT GGGCTGTTAT TCATCAAGGT 003200 003201 GGTCAAAGTC ATGAAGAACT GTATGTTATT CTATAATATA CTTTCTATAT TAAGTCTGTT CAGATGATAC CACATTTTCT 003280 003281 ACATCACTGA TCCATTAAAA AAAAATCTTT CTTTGAATGC CTCTTGCCAC TAATCAGGCT ATGATATTCA GTTTTTGAGA 003360 003361 TAGGTTAACA AATTGAAAAC CCAGCTTTAA ATGTTATGGT AGTTTAAAAA TAGAAGTGTT TTACTTCAAA CTATTCTGAG 003440 003441 TTGCTGCTTA GAGCAATAAA AATGTACTTT ATAGCTTGTT AACCTAGATC TCAGGGATAT CCGTTCTACA ATAATGGAAG 003520 003521 TAGATTTGTT TACTGTCTAA ATCAGCCTTG TCAGAACAAT GCTCTCCAGT GACTTTTTAA AGTCAGAGTA AACCAATACA 003600 003601 TTCTGTCTTC TGTGATTATA CAGCATGGCA TGGTGTTCTC TTGTATACTT GTGTTTTGAA TATGAGTAAC AGTCTTTAGC 003680 003681 TGACTTTAGC ATTTTGGAGA AATCTGTATA TGTGGCTTCT ACTTATATAA GCATCTACCA AATATATTAA CTGAGTTTTA 003760 003761 TAGTCCGGTT ATTTTCCATT TCAGTTACTT CCAAGACTCT TCGATATGCA CTTACATACT TCATACTCAT TAAATGAAGA 003840 003841 TATTGGAAGC TACCTTATTT TGAGGTACAG CATAAAGCAC CAGCAGAGCT TAGTTACTAC ACATTTTAGC ACAATCTCCT 003920 003921 GTAAGTTACT GCATGCTGCA AAAGAGCTGA ATGAGTCAAC AGACATTGTA ATGGTGATGT GTAACTCATA ACCTGAAATA 004000 004001 AACTATGTCA AATCG |
Predicted Small Protein
Name | NONHSAT115946_smProtein_2609:2839 |
Length | 77 |
Molecular weight | 8294.545 |
Aromaticity | 0.0394736842105 |
Instability index | 60.7013157895 |
Isoelectric point | 9.94757080078 |
Runs | 8 |
Runs residual | 0.036146400484 |
Runs probability | 0.079292527822 |
Amino acid sequence | MSLPLLDLSLQERWREKAIRAESLSEDTLGPPLPGSAGVRSISIAVIFIQALAPIRQPSS LENPIARNLKGRTLFS |
Secondary structure | LLLLLLLLLHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLEEHHHHHHHHHHHLLLLLLLL LLLHHHHHLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLL LLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiii iiiiiiiiiiiiiiii |