NONHSAT115823

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT115823

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4668 nt

Genomic location

chr6+:159422317..159426984

Exon number

1

Exons

159422317..159426984

Genome context

Sequence
000001 taacctggag ggtaacttgg gggctcagca cattatcaac aacacgtttt ttcccctacc tttccactct gtcacctggg 000080
000081 ttgttggctt CAACAAAGTA GTAATAGAAG TATCTGCTCT TTTGTCTTTA TTGGAAGAGC AAAACCCCCT CGTAAACTCC 000160
000161 CAACTGACCA GAATTACATC ATATTGATTT AAGCTTAGGA TCTATATAAG ACCACCATAT TTGGATTAGA CCAGGTAACC 000240
000241 GGTCTTTCTA GGCCTCCAAG AAACACTTGG CCAGGGAGGA GGAGAACAAA TTCTGTTAGG AGGATGTTGG GGCAGAATTG 000320
000321 AGTGGGTATT AAGTGGGTAA ACAATAGTGC TATACCAGCC ACAGTGGGCT TTATAAAGAA ATTGATAGCC ACTATAGGTT 000400
000401 CTTGTACAAG tttctttctt tttttttttt tttagatgga gtctcgctct gtggccaggc tggagtgcag tggcgcgatc 000480
000481 ttggctcact gcaacctccg cctccccggt tcaagtggtt ctcctgcctc agcctcctga gtagctggga ctacaggcgt 000560
000561 gtgccacccc gtccagctaa tttctgtatt tttagtagag gcggggtttc accatgttgg ccaggatggt cttgttctct 000640
000641 tgacctggtg atccgccctc ctcagcctcc caaagtgttg ggattacagg cgtgagccac tgtgcctggc cTGTACAAGT 000720
000721 TTTTATCCAC AGCCTGTttc tcttcttgta ctttctccca gggcagtccc atttcacgtc tgtaatttct agtaccacct 000800
000801 atatactcag ggtagcaaag gatgtatctc taacctagac ttctccctca ggtgacagtc ctggatatct gactattttg 000880
000881 tggacaactc ttggatgatc tgaAACTGAA AGattcattc cacaaatagt tatgtgtatc tagtatgtgc caagcattgt 000960
000961 tgttttcttg tccctcgtcc ccactcccct ggtgttagtg gggatatagc agtgaaaaac aaaaacaaac aacagattaa 001040
001041 aagtcctgcc ttgacagaat ttatattcta gtggaggagt catacaaaca agaaaagtga gtacattatg ggtgttacat 001120
001121 aattataata gctaattcga aataaagcag gaaataaggc taggtgctag gggcatggga gacctatcaa ttttatagtg 001200
001201 gtcagagaag gcttcattga gaaggtgaca tttgagtaaa gacttgaagg aggtgaagaa atgaaacttg agacttgtga 001280
001281 ctaattgtca cagcattcca ggtcaaggaa gcagccaatt cctcgttcta aggcaggaag tcgtgttggg gatggcagta 001360
001361 agagtgagtg gagcagagtg agcacaagga ggagcattcg gagatgaagt cagaggctgg gccgtgcgcc ctgttgtagg 001440
001441 tcagtgaaag gactttaggt tttactctag ggttaaaagt ccctaaaggg ttttgagtag aagcttgaca tagtttgatt 001520
001521 aaaaaaattt gttttttcta gttgtttggt tgagaataga ctgaagtggg gcaaaggcag aagcagagag accagatagg 001600
001601 aagctgctcc caataaggct ggtgagaggg tggcttggat ctggtgtagg tgtggtgCTC GGGCCCGAGA GATGCAGTGA 001680
001681 GTCAGTGCCG AGGCCATGTC GGGGGACAGA CTGCCTTGCT TTCAGTGGAg cttggttctg gatctgggac aaaagtggtg 001760
001761 ggaagatccc agctcaattt tgaaggtaga acagattgga cgtgacgtgg tgcacgagag aaagaaaggc aaaagagatg 001840
001841 aacctaaggt ttctgATTAA ATGTTAGACA TTGTGTAGGA AAAAAATCAC ATAGAGGCTC TGGCAAAAAA AAAAAAACta 001920
001921 aataaataaa taaaaaataa ataaataaat TGCATAgaga ctgtggctga tgttgtgttt ctccagaaag gatttaattt 002000
002001 tattctggca agcaattaga gtaggaacgg atgacttttt tttttttttt ttttgaggcg gagttttgct cttgttgccc 002080
002081 aggctggagt acaatggcac tgtcttggct cactgtggcc tccacctccc gggttcaagc aattctcctg tctcacctcc 002160
002161 caggtagctg ggattacagg tgtgcaccac catgcccggc caattttgta tttttttagt agagactggg tttcaccatg 002240
002241 ttgatcaggc tggtctcgaa ctcctgacct caagtgatcc acctgcattg gcctcctaaa gtactgggat tacaggtgtg 002320
002321 agcccctgcg cctggcctca gatgaccttt aattagggat tcagactttg tgagggctga tcattttcta gtttggcctt 002400
002401 atcccagagc taggcctttc tattctttct caacatgaac atctgtggta tttaacaggt ccccatcttt gggtgacctt 002480
002481 gaactccaat ttttgtactc ccagctctgt gagactgttg aaatgtacac ttagcatttt agctatttag caactgtttg 002560
002561 gtttcttgat ttccagtgcc cttacagctt agaattcagc aaatgcctca aggataaaag ccaaactaaa tgtcagactg 002640
002641 gcttctctat gatcctcctt tctttgggat ctgtcccttc aagtccTATC CGCAGTTTTC aactccaatt ttttatctcc 002720
002721 ccgtatctga aagggccctg atacctccag gtcactgctt tctgctcgcc ataaatgccc tgcacaaaac tcagcaaatg 002800
002801 acccaatcag aaaaagcaat ggagaagttc tgtatcactt tatgcatctg tcttctggga tcccagtctc tcatgtcttg 002880
002881 accatcttgg ttgctctcca gtgtcttcaa acagcctgtg tagtttttgt tatgtgtgct tttttaaatg ttcagctctt 002960
002961 gtgcttattc ccatgagagg actggtttaa tttaaactat tcaattacag ctagaggcCA TGATaaagtt gttgactaga 003040
003041 gtatctggaa gaatggagtt gccatttagt gatagaggga acgctgggga ggatccatta ttggagtgag cattagcagc 003120
003121 ttggtctggg gcacatcaag cttggaaggc atgttagtca tccaagtgga gatgttgagt agacagttgg acatgggagt 003200
003201 ctagagtttc aggagattgg tctgggctac agaagtggat ttttgaatca acagccatga gacttgataa gattaccaag 003280
003281 ggagtgtaga gagataaggc cttgagtgtt ccaatattta gagtttggaa agatgaggaa taatcagcaa aggagactgc 003360
003361 aaaagagggc caacaaaatg gtagaaaatg cggaaagcct ggtcacctgg gagttaagta atgaaagtgt ttcaaggaga 003440
003441 aagtaatcag ctgtatctaa tgctatacat gtgctaagca agataagaac attggatcta gcagcataga ggtctctggt 003520
003521 gatctgaaaa aaggcaactt tcatgaagtt gtagaagaga aagttcagtt ataatggatc ctgaagagag tgacagaaga 003600
003601 gcgatttatg actcaaggaa agaaaaaaca aatgggctgg tagttaaagg gaaattgagt caagaaaagg ttcaatattt 003680
003681 tttaatggta gaattgaccg tatgtgtatg tgcttctaga agtgattcag gagagagggt ggaatggatg gtgtgggacg 003760
003761 gagggaagaa ttggtggaat gatgttggca aaaaggaata ggcttttgtg cataagttga gggattggcc ttgcctagaa 003840
003841 acatggacaa ttcgtctata gtaagaagag aaaaggtaga tctatgacca cagacatagt cagatAATCA TTTTAAAATT 003920
003921 CTTTAATCAA TAGATGTTTC TGAtgtatgg caggcagtaa gctaagcagt ttacatacct gatttcattt agttattata 004000
004001 acaatcccag tctaacaatg aggtagattc tgatattatt cccatttaat ttgcaaggaa ctgaaattta gagaagttaa 004080
004081 aatgacttac caaagtcata tagcaagcaa gtgacaggac caagacttaa gcccttgact gctggactct agaacTTAAG 004160
004161 CAAGAAAGCA TCAGCTTATG ATGTTCATTG TCCTCCCACT CCCAGATCCC CCATTTCTTG CCCCTTTTGC TTGTTCCCCC 004240
004241 TCCCCTCATT CTCCATATCC CAATAATCAC TAAGTCCTGT CCATTTTACT TCCTCAGTGT TTCTTGCTTC TGGATCCTCT 004320
004321 TTTTTGTATC CTTCCTATTC CTACCAGCCT TTGACCTCAT CATTCTGACC TCATGTAGTC TAAATTAAAT CGTCTATGGA 004400
004401 ACCAAACAAT AATCGAACAG AATGTGATCC TTGATCATGC TTGCTCCATA ACCCACTGCC TAATGAGTTC AAGTTTCTTA 004480
004481 AACTATGCTA TAAGCCTGCc actacccggt tactgcgtat ttttcgaatt tcacatctca ctgatttctg tcttgtactt 004560
004561 tttttctcag cagagctgag cgcttgcagt cccactgcat gaactatcat gtttccacgc tgtgtttgtg ctttatgatt 004640
004641 tttccttgtc tcttttcctg gatttttt
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Predicted Small Protein

Name NONHSAT115823_smProtein_2030:2218
Length 63
Molecular weight 7071.1619
Aromaticity 0.225806451613
Instability index 41.0774193548
Isoelectric point 5.42498779297
Runs 7
Runs residual 0.0407373271889
Runs probability 0.035140182199
Amino acid sequence MTFFFFFFEAEFCSCCPGWSTMALSWLTVASTSRVQAILLSHLPGSWDYRCAPPCPANFV
FF
Secondary structure LEEEEEEEEEELLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLE
EL
PRMN LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL
LL
PiMo ooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiii
ii