NONHSAT112849
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112849 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1866 nt |
Genomic location |
chr6+:42855731..42857596 |
Exon number |
1 |
Exons |
42855731..42857596 |
Genome context |
|
Sequence |
000001 CTGGTGGCTT TTGTATCGTA ACCTGAAACT GGCTTAGTAC TTTTTCCTAA AAGCTCAGGA TTTGAGAATG AGGACCCCTT 000080
000081 CGCCAGGAAA ACATGTATAC ACTCAAAATT TTGCTTGCAG TTCTAGGGTG TTTAGACCCT TCTCAGATAC CTGTGCATCT 000160 000161 TATGGGTTTT GTTTTTCTCT TTGAGACAGT CTCACCCTGT TGCCCAGGCT GGAGCGCAGT GGCATGATCT CAGCTCATTG 000240 000241 CAGCCTCCAC CTCCTGGGTT CAAGTGATTC TGCCTCAGCC CCTTGATCAG CTGGGATTAC ATGCATGTAC CACCACACCC 000320 000321 AGCTAATTCT TGTATTTTTA GTAGAGATGG AGACAGAGTT TCACCATGTA GGCCAGGCTA GTCTCAAACT CCTGACCTCA 000400 000401 AGTGATCCAC AAGCCTGGGC CTCCCAAAGT GCTGGGATTA CAGGCATGAG CAACTGCGCC CAGCTCTTGT GTACCTTATG 000480 000481 TGAGGAAGTC CTGCTCAATC AGGATCGGTC ACGCAGGCCC TGATCTTGCT ACTCTGGTTC CATGTCCTAT GGAAGACCAA 000560 000561 AGTTTACCAA GATAGATTTT TCCCTTCATA GTGGCAGATA GTGTTAACCC CTGCACCATC TGTAACTCAG AAATCCCCAC 000640 000641 CATTTCTTCC CCTGGGCTTC AGAATAGAAT TGCCTGGTTT CTCTGATGAT CAGCATGGTT CCTTAAAACC CAAATCAGCA 000720 000721 AGGAATGAAC AATTTTGTTT GGCATGGATG AAATTAGCAC TGTTTGGCTC GTTAGGCCCC AGGCAGGCAG GCACCTTAAT 000800 000801 TTTTTCCTTG CATATTCTAG TCTTCAGAAG CATTGCCTTT TGTCCTACTG GTAGTGACAT AGACCAATAA CAGGGCATCT 000880 000881 GGGGATTTTA ATCCTGAAAA CAGTGAGTCT GATACTGCTT GTGTTTTTCA TCAGTGTCCA CCCCAAGTGG GTCTTCCTGC 000960 000961 TATTCTCTTC ACTTAGTTGC CCCTCACTTG CCATCTGAGC AATTGGCAAG GATGTGCCAG GCCTAGGTTA AACTTGGAAA 001040 001041 CATGCTTGAC CATTCTATTC CCTGGTCCTT TAAGATCAGT TTGGCTGCAA TTTTGGCTCC TTGGACCCTC AAGCATAGCT 001120 001121 GGTAAATCAA GTTAGAGATG TAACTGCCTT AAAACATGCC AGCTTAGGCT GGGCACGGTG GCTCACACCT GTAATCTCAA 001200 001201 CACTTCAGGA GGCTGAGGCA GGCAGATCAC TTGAGGTCAG GAGTTCGAGA CCAGCCTGAC CAACATGGAG AAATTCTGTC 001280 001281 CCTACTGAAA ATACAAAATT AGCCGGATGT GGTGGTGCAT GCCTGTAATC CCAGCTACTT GGGAGGCTGA GGCAAGAGAA 001360 001361 TTGCTTGAAC CCAGGGAGGC AGAGGTTGCA GTGAGCCGAG ATCACACCAT TGCACTCCAC CTTGGGCAAC AAAAGCAAAA 001440 001441 CTCTGTCTCA AAAAAAAAAA AAAAAAAAGT GCCAGCGTAT GAGGTAATTA GATTGGTTCT CTCCAGAGGT AACCTGCCAA 001520 001521 GAAGAGATGC TATAGATGTT ACTCCTATAC TGTAAAACAT TGTGAAATCA GATTACTTTA AAATGATGTA TTACAAAGTT 001600 001601 ATGCAAAAAA GCAGTTGTGA CTATGGAAGC CCAAGGCTTA TATCCCAGCT CTGTCTTACA CTAAATATGG GTACAGTGTT 001680 001681 TCCACTCTGT CCATAAAATG GGAGCTAATA TTCTCCAACC TGTGTGCCTG ACATGATGGT TAAAGGGATT AAACAAAACA 001760 001761 ATAGTTTGTA ATTTATTCTG TCAGAGCAAA CTGCTGGTAA ATAAAAGGGA CTAAGTTGAC GAAAAATAAA TTTTAAAAAA 001840 001841 CCTAATAAAA CAAGTTTGTA ATTTAT |
Predicted Small Protein
Name | NONHSAT112849_smProtein_92:226 |
Length | 45 |
Molecular weight | 4768.7442 |
Aromaticity | 0.113636363636 |
Instability index | 46.0522727273 |
Isoelectric point | 5.30181884766 |
Runs | 7 |
Runs residual | 0.00401069518717 |
Runs probability | 0.0768541650894 |
Amino acid sequence | MYTLKILLAVLGCLDPSQIPVHLMGFVFLFETVSPCCPGWSAVA |
Secondary structure | LHHHHHHHHHHHLLLLLLLEEEELLEEEEEEELLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooo |