NONHSAT112118
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT112118 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
911 nt |
Genomic location |
chr6-:34214807..34216831 |
Exon number |
2 |
Exons |
34214807..34215641,34216756..34216831 |
Genome context |
|
Sequence |
000001 GATCACGCGC CTGACGGCTT TTCCGGGGCC CGGGAGCCAA CCGAGGGCGT TCCTGTCGGG GCTGCAGCGG CGGGAGGGAG 000080
000081 CCCAGTGGAG GCGCCCTCCC GAAGCGCCAC TGCCCATGCT GACCACCCAG CCCTCCGGCT GCTGATGTCA TGAGTAACAC 000160 000161 CACTGTGCCC AATGCCCCCC AGGCCAACAG CGACTCCATG GTGGGCTATG TGTTGGGGCC CTTCTTCCTC ATCACCCTGG 000240 000241 TCGGGGTGGT GGTGGCTGTG GTAAGGAGCC CTCATATACA CACAGACACC CACAGCTTTG CTAAGGCAGG GGCTGGGTGG 000320 000321 GCCTGGTCCA GTCTGCACAG AGTCCCCACT GTCCTGTTAA GGGAGTGAAG GGTGTGGAGG TGGGCCTCTC TCTGCCTGTG 000400 000401 GGCCTTCCTG GGCTCAGCAG CCCCCACAGT GCTGTGTCTC TGTTGCAGGT AATGTATGTA CAGAAGAAAA AGCGGTGAGT 000480 000481 GTCCCTGTCC CCCACCCGCC CTAACCCCAC ACCCGTTCTG AAATTCCTGC TCATAGGCTC TGACTTTTCT GTAAGATGTC 000560 000561 CCTCAGCCAT CCTGATACAA GCCTGAAATT TGTTTTCCCT GCCCCAGCCT CAGGTTACTC ACTGGGGAAA GCCCCTTTGT 000640 000641 AGAATCAGGG TTGTATTCTT GGAGGTATAG TGTGTCCCAA AAGGCACCCA CTGGAATTGC CCCTGCCTGG GAAAGGGAGG 000720 000721 AGACGAGGCA GCCAGGTGTT TGATGAGGGT TGGGGGGACC TCCTAGCTGA GTCCCCTCCC CTGCTCCCCA GGGTGGACCG 000800 000801 GCTGCGCCAT CACCTGCTCC CCATGTACAG CTATGACCCA GCTGAGGAAC TGCATGAGGC TGAGCAGGAG CTGCTCTCTG 000880 000881 ACATGGGAGA CCCCAAGGTG AGCACTTGGG G |
Predicted Small Protein
Name | NONHSAT112118_smProtein_149:367 |
Length | 73 |
Molecular weight | 7712.7782 |
Aromaticity | 0.0833333333333 |
Instability index | 47.9819444444 |
Isoelectric point | 8.41766357422 |
Runs | 14 |
Runs residual | 0.0535279805353 |
Runs probability | 0.0333926363339 |
Amino acid sequence | MSNTTVPNAPQANSDSMVGYVLGPFFLITLVGVVVAVVRSPHIHTDTHSFAKAGAGWAWS SLHRVPTVLLRE |
Secondary structure | LLLLLLLLLLLLLLLLEEEEEELLEEEEEEEEEEEEEEELLLEELLLHHHHHLLLLEEHH HLLLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLL |
PiMo | ooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiii |