NONHSAT108944

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT108944

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5818 nt

Genomic location

chr6+:32860030..32871839

Exon number

2

Exons

32860030..32862704,32868697..32871839

Genome context

Sequence
000001 tccaactttt ttttTGGTCT GTTGTTAAAA GCCCCCCTAT CCCATGCCTA AGTAATAAGT AATCTCAATA TTACATTCCA 000080
000081 TCTCATATAA TAAAATTTGA CTTCCTAAAA GGGCTTGCTT CTTTTTAATT CAATGTCAAT GCTGGAATTT CAGTTCTTAG 000160
000161 CCTTGAAACC CTGGTGAAAA AATTCTCAGC AAGGTAAGAA GGAAAAAAAT GTTCTCCCCT GCTCCTGAAG CTGGAGAGAA 000240
000241 CAATAAATGA AAACTGTTGT CATAAATGGT TATTTCTAAC AATTTTTCAA ACCCCTAGAC TTCAAATATT TTGGACAGGA 000320
000321 CCTGACAAAA TGACCCTTAA TCTGTAAAAC ATCTGTACTT TTGACCACTC ATCTTTCTTA ATAATTCAGT TCTCTGGTGA 000400
000401 TAATGTTTGA GCTTAAAATC TCTATCTTCA GAAGGTAACG TGATTTGTGA ATTTTCTGTC AAATCAGGAA AGAATCACTG 000480
000481 GCATTGCCCT CTTCCCACAC ATGCATAGGA TAAAATAGCT CTACTGGACT TTTTATTAAT CAAAGAGCCC GAGAGACAGC 000560
000561 TGAATGGCTG AACCAAGCAG AGAGTGGAAA CTTGGGGAGG GTAATTCCTT GCTGGGCCTT AAAAGGAGTC CACAAGATAG 000640
000641 GAAAAAAACG AAAAAGCCAA ATAAGATGAA CCTCTATTCA GGCCCCAATG AGAGGCTGCT TGACTCTGAT CTTTCGTTAG 000720
000721 CTGGCTCAAA ATTTTGTTCT TAAAGAATTA TTTTTACTCA AAATCAAGAA CTGTTAGAAA ACAAGAAAAA TTATGGAGTT 000800
000801 TTGTTGTTGA TTTCCACCTC TCTACATATA TATATgaaat acatatctcc tcccgataca catgcacaca cgcaaaaaca 000880
000881 tatttaactg aaacaacggt ttcatgaaac tatagttact ctcattacct gtgatgcagg caagtatttt caattgtatt 000960
000961 ttattctatt tcattctact tggaaaaaaa gtcttttggt ctcaacataa atgggttctg acctgcagtt tcaaGCCAAT 001040
001041 ACGTTACAGT AAGAGTAAAT GTAGGGTTTC TCCCAGTTTT ATCTGGCAGT CCCAAAGTCA GGATCAGAGT AACCGATGGA 001120
001121 GCATCATTTG TACGCTCCAC GTCTGAGGAG GAGGTCTGGG AAAAGATCCA ACGTGTAgga ctggcgcaga ggctcaggcc 001200
001201 tgtaatccca gcactttaag aggtggaggc gggaggataa cttgaggtca acagttcgag acaagcctgg caaacatggt 001280
001281 gaaaccccgt ctctactaaa aatacagaaa ttatccaggc gtggtggtgc gcacctgtag atccagctcc tcgggaggct 001360
001361 gaggcacgaa aatcgcttga acgcgggagg cggaggttgc agtgagacaa gatcacacca ctgcactcca gcctgggcga 001440
001441 cagagcgaga ccctgtctca aataaaaaaa aTAATAATAA TAATCCAATG TGTCCCTAGT CTGGCTTTCA GGGTCTTAGA 001520
001521 TGAGGTTCGG AAGTGGACTT AGGAGCCTTA GGAGCGCAGC CAGTGCTGTG GATTCCCACA TCCACGGGAC CTGCGGTTTC 001600
001601 GGGTTATTCC ATTCAGGGAT ACATGACGTC CCTCATTTCT ACCTACCAGT GGGCTGGTCA AGATTCTCAT TTATCAAGTC 001680
001681 AGTTGGAGTG GGCTTAAGTA AGTTCTCAGC CAAGGCTGTG GGGTCTGGAG GACCAGATAT CCCGACCAAA AGCCCCCCCT 001760
001761 CCCATTCCTT TCACACGCCT GCCGCAGAGG TGCACGGGTG CGAGTGGGGA ACTGAGGCAA GAAGCAGATG GGGCGGCACC 001840
001841 GAGAGAAGAG AAACTACGCT AGAGGAAAAG CTCGAGCTGT TAcccctccc aacttcttcc gccttccgcc ttcccccttc 001920
001921 cccctctttc ccctcttgcc cctctccAGC TTTTCTGGTC CAACCCTCTT CTGCGCCTAA CACTGGCACC TCCTTTTCTT 002000
002001 CCGGCTGATG AATAATTGTC CGCAAACCAG CCTCTCTGGG GCACTGAGGG GCGGGAAGGT TAGAAGGAGC CAGGGCTAGA 002080
002081 GTCCTGGAAG GTGGCAGTCA GGTCGCAGGG CCACAGCAGT CACTCTGCGA CTCTCTCTTC CGGTGTTTCT CCAGCGCCAA 002160
002161 GCGGGAGAAG ACGGAGCCTG GGAGCTGGGA CTGGAGGAGC GGGAAGCGCA GTATCGGGAC CACGGCTCTG GGACCAGGAA 002240
002241 AAACGCAGAC TCTCCAGAGT CAATGTCTAC TTCAGCCAGC TCAAGGGCGC GACAACCTGG CGCCGAGCAT CTCAGGCCGC 002320
002321 CGCGGGGACC CCCCCTAAGG GACTCGGGAA CACCTGCCTA CCCTAGAAGA GGCGGAGAAT AACCCCGTAG GGAGTTAAGC 002400
002401 GGCCTCTGCC TACAGCGTTC CTCCCGCCTC CACGGCGCCG AGCCCTGATT GACGTTCAGC CAGGCCAATC ATAGCCTGTG 002480
002481 TCTGAGGCGC GCGGAGCTGG AGCGCCCAGG GCATGTCCGC CGATCCCAAG GAGGCAATCT GTCAGGCGCC GCCCGGGCGG 002560
002561 CAGTATGCCT GAGGGGGTCC TCCGTGTTCG CGCCTCCCGC CGCCTGCACT GAAAGGTCTG TACCTGAGCC TGGATACTTG 002640
002641 AACAGAGGCA GACACTGCGG CTCAAAACCC CAAGGaatat cctagctctg agacaaaaat tgggaacctc agcatgagtt 002720
002721 tgtcacctga atgaaataaa aaaaatcacg ttgaaggctg gtgcagtaac atgtgcctgt agtcccagct actctggagg 002800
002801 ctgagtcagg aggatcactt gagaccagaa gttcaggaat tcaagactgg cttgagcaac atagcaagac ttcatttcaa 002880
002881 aacaaacaga aaaaagccac caccttcagt atttcttgcc aaagcaaagg agccatttgt tctttacgat ggtcaggaaa 002960
002961 ggaagcatca aggtcatcaa atgaaaaatt ttcagcattt cagcctctct gctcagggaa atatctgaat ctagaatatc 003040
003041 acaacatgag ccaaaaccgc cccatttctc atgccacatg tcactcttaa cacaaggtta ctcaacctcg agcatggttg 003120
003121 gcatttgggg ctgaataatt cttttttgta gggggctgtc ctgggcattg taggatgctc atgagctacc tcagtctcta 003200
003201 ccacccacta gatgccagta gcattgaccc ctgatctctc tacccaagtt gtgacaacta aaaccatctc tggataatgg 003280
003281 aggaacctta aatgcatatt gctaaggaaa agccaatctg aaaggattac atattgtatg agtccaacta tatggtaatc 003360
003361 tggaaaaggc aaaaccatgg agacagtgaa aaggtagtgg ttaccagtgg tccatgggaa gggttggatg aataggtgga 003440
003441 gcacagagga tttttaaggc agtgaaacta ttctgaatga tactgtaatg gtggatacat gtcatacctt tgtcaaaacc 003520
003521 aataaaatat aacaaccaat aaaactgcac aaagagtgaa ccctaatgta aactatggac ttaataatgt atcaatattg 003600
003601 gctcaccaat tttaacaaat gtaccacact aatgcaagat gttactaata gtggaaactg gagggaagag ggcttgaggg 003680
003681 gacatacggg aactctctgt aattcctgtt cagtttttct gtaactgtta aactgtccaa aaaaagtctg ttTTTATAAA 003760
003761 TGGAGGCATG GTTTTATATG GACTAAAATA CTATGATTGC CTTTTTATTT TACACATGGT GAAATTAGAG CAGGACATAT 003840
003841 TTTAAACTCA AAATTCACAA AATTAATTTA TGAAAATGTT TACCCAGATC AAGAATATTA AAGAAACTTA GATTAATATT 003920
003921 GTTACCTTGA ATTTATTTTA CTGAGTAATC CTCTAAGACT CCTCTACACA TTATTAATCT AGAAGGATTT TTAAAGTCTT 004000
004001 TATGACAATT AATTATTGGT CTACAGTCAA ATTGCGTATC CCCATTAACT AGAGTTATAT TTTTCCATTT TCTGATCCAA 004080
004081 AAACTTTAGG AACAGGAAAT GTTTATTTTA GAAAACAAGA ACACTTCTTA AGCATTTGCT GTTAACAGTT ATTTTCACAT 004160
004161 GTGCTTGTAC TTATTTTACA CTTGTCAGAA CATAGTATTT ACCTTTGAAC CAAGGTTTTA TAATAAGCAA GCACTTTTTT 004240
004241 TATTTAGAAG TCACATTTTC CAAGTAGAAA AATCATTAAA AATTCAGTCC TCTGAAGGCT AATTTCTTTA AATCATTTAA 004320
004321 CCTAATTGTT TAAGGTATAG ATTGGAATTT TTCTCAGCAC TCTCTTGAAA ACAGGTGACA GTGGAACCCT GTTAGGTTCA 004400
004401 CAAATCCTAG ACTTTGATTA TATAGCCCAG GCTCAAATTT TTCTCGAATG TTACGAACAT TCAAAGCATT AGGAGTCTTG 004480
004481 GTTTCATTTC TTAATTTTTT TTCTTCTGGG TATATTTGAG ACTCATCTTG GATTCAAATA AATTAATAAT AGTCTCATGA 004560
004561 AACCGATAAA AATGGGAGCT CCATTGAACA TGAGAGACAT TGATTCGTAG TTTCTAACAT CCTCCAAATG AGGAGCCCAT 004640
004641 CCCTAATTTA GATGCTTCTT TCAAAGGAGG CTCCTTTCCT TCGTTATCCA TAATATAGTC ACACCAGTCC TGAAAAAACA 004720
004721 TGGAACAGAC TCCAGATCTT TATATTTCAT ACTCTAAAGT CGTACAAGCC AATCTGCATT TCCTCTAGTG GAAACTGTAT 004800
004801 AGCTGGTCAT CTTTCCAGGA CCCTTTTATC AAGAAACAAT GCAGCTTCTA CATTTGTGCT GCTTCTACAC CAAAACAGCT 004880
004881 GGAATGTATA TAGTATGGTT CTGGATGCTC TTGTATACCT CACTCTTCAT TTCTCACCTA ACCCATGtgc tatgatttga 004960
004961 atgtttctcc cctgcaaaac tcatgttgaa atgtaattgc catgataaca gtattaatag gtggaatatt taagaggtga 005040
005041 ttagggtggg attggtgatg ttataaaagg gtaagttcag ccccttcttg ctctctctgt cacccttcca ccttcctctg 005120
005121 tgtgatgatg caacaaaaaa gcccttccca gatgccagca tcttgatttt ggacttctca gcctacagaa ctataagcca 005200
005201 ataaatttct gttatttgtt attagtctgt gatattctgt tacagtagca caaaatggac tatgacaCCA TGTGTTTACA 005280
005281 CAGAAAGAAA AAAATATCAT Acggtaattg ctcctaaata tgcagagaat atgttctgat atccttagtg gatgcctgaa 005360
005361 actgcagata gtaccaaacc ttatatatac tatgtttttt ttcccataca tatgcatgtt aaagtttata agttaggcag 005440
005441 agtaagatat gaacaataac taataatgaa atagaaacgt aacgatgtgc tgtaataaaa gttatgtgac tgacgcctct 005520
005521 ttttcttcct ctttctttca aaatatctta atattttcaa gccatggata actgaaactg cagaaagtga aactgtagat 005600
005601 aaACTATTAA CTCTATTTAA ACAATAAAAG AATTATAATT ATATTCTTGG GAAAATTAAC AATTATCCAA AGTCCCTTTG 005680
005681 CAAAGGGAAA AAAAATGCAT GTATTGGAAA AAATCTCAAC CACAGGGTTC CCTAAGCTTT GCAAACAACA AATAGCATCC 005760
005761 ACCTATCCAT CCTCAGAGAG CAACAGTTTT ACTGTTATTT AGAAAAAGCA ACTATTTC
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Predicted Small Protein

Name NONHSAT108944_smProtein_563:742
Length 60
Molecular weight 6608.4999
Aromaticity 0.0508474576271
Instability index 50.7694915254
Isoelectric point 9.72857666016
Runs 7
Runs residual 0.0258124708443
Runs probability 0.0375753905166
Amino acid sequence MAEPSREWKLGEGNSLLGLKRSPQDRKKTKKPNKMNLYSGPNERLLDSDLSLAGSKFCS
Secondary structure LLLLLLLLLLLLLLLLLLLLLLHHHHHLLLLLLLLEELLLLLLEELLLLLLLLLLLLLL
PRMN -
PiMo -