NONHSAT108615

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT108615

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6026 nt

Genomic location

chr6-:30255174..30294150

Exon number

4

Exons

30255174..30260376,30262248..30262741,30263909..30264014,30293928..30294150

Genome context

Sequence
000001 TTTTAACATT CAAGGATTAG GTAAGTTCTC CCCGCGGTAG ACTTCAAATA CTCTTTGTCC TGCCCCTGCT TGGCGAAATT 000080
000081 TACCGAAATT ATCTACCTAT CCCGCTGGAG TGGGAGCCGG GGGAGAGCTG GAACCGCGTC TCTGCTGCTC ACCTTTGTGT 000160
000161 CCTTAGCTCC TTCGCATGGG GTCCGACCGC AACACGTGCG CTGGATAAAC GCTTGTTAAC TGGAGCTCCC TCTTTGCCCA 000240
000241 CTAGCAGGGC ATTAGCTGGT GCTGAAGACA GTGGCTGCTT GGCGAGCCTG GATCTCCAAG TGACCCCCTC AGCAACTCCT 000320
000321 GATGAACAGG ACTGAAGCCA ATATTAAAGC AAGTCAACCA AAGGTTCTCT GGTGTAGACA AGACAGCAAA AGGACAGACT 000400
000401 ACCTTGTGGA ACCTAGCATT GTTCTCCTTC TGCAGCACTA AGTAACATTT GTTCTCCGTT AAGATCTTTG CAAACCACAC 000480
000481 ACAAGAATTG CTGGTCATCC TGCCAATAGA TGCTGCTCAC AGAACCAAAT TTCCTGTGCT GAATTGTCAC TCATGGGCTT 000560
000561 GAGAGTAGGA GACTGGAGAC CAAGGTGGCT AGAATCCAGT TGGGCCTGAT GTCTCCCTGT TGAAAGGGCT CCTTGTGGAA 000640
000641 TGAATAGCAC ATGGCTCCTG TGGTGGATCT GATAGTGGCA TAGCACCAAG TGATGCAGGC CTGCCAGGGG CCACAGACAC 000720
000721 AGAAGATGCT CCCGGGGTCC CCCATGTACT CCAGACACAC TGCAGGCCAC CTCTCCCAGC AGGTTGCCAG TCATGGGCCC 000800
000801 CATCATCATG ACTTCTGTCC AAGGTACTGT GTGCAGAAAT GTGATTGAGA TTCAAGTCAG GGCCTCTCTG CCCTTTTCCC 000880
000881 TCCAGAAACA AAACCAAGAT AATTTATCCT GAACACGGTG AAAAAAGGAA GGGAGGGAGG AGAAAAAGTC CGGGTCTCAC 000960
000961 CTGGGATTCT CTGTCTCCTG CAACATGAAG GATTTAGCCT GGGAGGAGGT GGTGAGAACT CTGGGAGAGA AAAAAGAAGG 001040
001041 AAAGAATAGT TTTACCCATG CTGAAGTTAA TTTAAACCTT CACCTAGAGA AGCAAAAAAA AAAAACCCAC ACTTTCCCAT 001120
001121 TTTGTGCCTC CCTTCCTAGA GTTTTAGCCA AAGGTTTAGC TAAGTAATTG GTTTTACCAG CGCACTCACT CCTCCTATCC 001200
001201 CAAGTCTGTT TGACTCCCTC CCCATCATCC TCCTCACCTC TTTTCAGGCA GGGTGGGGAT AGCAGCAGGA GGAGATTTTG 001280
001281 GGAGCCTGGC AACTCCTGCA AGGACCGCAG GACAGCCCCT CTGTGGGGAT GCGTGGTGCC CCATCTGCCG CCCTTCTGAA 001360
001361 GAATGCACTG CCTTCACTTT TTACTGTGTT AGAGTCCATC CAGACTGTTC TATCCAAAAA AGTTTCTTTT TCCCCCACAG 001440
001441 GCAATCAGGA AATGATTCCT TTCCCGACTG CTTCTGTCTA GTGCCTGGGA ATCTTGAGTC AATCCCTCAG TAAGTCAGTG 001520
001521 ACTAGGGAAA TCCCTCTCTG AGCCTCCCAG TTCATGTTGC TTAGGGAACC TGATATTTTC GTGAAACCTG CCTACACATG 001600
001601 GGCAGCCCAA CAGCAGAACA AATGGTGGTG ACCAAAGTGA ACAAAGAAGT ATAGTTGTGC CAGCTTCGTA GTTGCCCATG 001680
001681 TGGACAAGTC AGCAGGATCA GGACACGAGG AAGAGTAAAT GTGAGACAGT CAATGTGACT TCTGCGATAA ACAGATTTTT 001760
001761 AAACCCCGAA ATTTTGCAAA ATTTTGGTGA AACCTGAACT TTCTTCGTTG CATATACTGG CACTATCTGT ACCATCATAC 001840
001841 AACTGTCTCA CATTAAAGCT ATTTTTCTTG GGCACTGATG AGTAAGGTTG GTATAAGTTC CTCAGATCAA CAAAAACCCA 001920
001921 TTTTCCTGTA AGTCTTACAT TTAGTATTTA AGGAACTAAA ACTTAAATAC ATTTTGTGAA ATGGTTGACA CTTCACTGAT 002000
002001 AATGATTTAT TGCTTGGATT AATAAATTTT CCAAAAGTTG TCTTATGTAG AATATGGTTT GCAACCAGCA GAACCATTAA 002080
002081 TCTATACTGC AATGATATGC ACTATGTATA ATTGTTTAAA AGCCTCTACT TAATGATGTA AAATGCTCTA TTTAATTACA 002160
002161 CATTTGGGTA AACTGTATAC TAACATCTGA TGGCATTTTT CCACTGTTTG TTGCTTTTTT CAAATACTTT ATTGTACAAA 002240
002241 GCTGTTCTTA ATATTTTTCA AGTTTTTTTC TTTGAATTTT GCTAATGTTT TCCTTGAATT ATGAGCACTG ACAGAATGTG 002320
002321 CTTAGCACTT TTGGCTATTC ACACAGCTTT TGAGCATGAT TTGCATCCAA TATTTACATT GCTAGCAATA ATAAGCCATC 002400
002401 TGTGAGTTTT GTCAAAAGTT ATTGGGGATT TTTTAAATTT TAGAAATGCA AATTATTGTT TCTTTGAACT AACTCTTATG 002480
002481 CAGTTGCAAA GGCATTTCCA GTTGTTATAG TTTGTGTACA ATATCAGGTG TTCCAGATTA TGATTCATTA TTAATATCAT 002560
002561 TGCTTCCTTG TTCCCTCTGA GGTCCAGAAG ATTCATGTTT ACAATATTTA GAAACAATGT TAAAAAGGTA TCCAAAGTTT 002640
002641 GTCACTTTAT TATTAGTTTG TTCTTAATAT TCTGTTTAAG TTTTTGAATT CATAGATATC AAAACGCTGC ACAATTATGA 002720
002721 TTTCCACAGG AATAACAACA CACTAACAAT AAGAACCAAA AACAGCAAAT AGGCTGCCTA CAAGTTTTGA CAATATTAGG 002800
002801 ATAATGATAA TGACAGTTTT TCTAAATCTC ACAGTAAAGA ATGCAGCAAC CCAGCAACAC TGCTACCTGT GGCCTCAGGC 002880
002881 TGCAGTGTCA GCTCTTCCCT GGGTCTCCAG CCTGCCAGTC TAACCTGAAA ATTATGTACT TGCCAGCCCC CACAGTCACG 002960
002961 TGAGTGAACT GGCCCAGGCT GGTCACCAGG GTCAGTTTCT CTGTGTGTCA TTAATTCATT CAGTCTTCAG CAGTCTCTTT 003040
003041 GGAGCTGAGA TGTACCTACC ATCTGCCTTT TGGGTGCTTA GGGTGGAGAA CCAGAAAAGT ATAACCTAGT GTGTATCCTC 003120
003121 AAAGAGCTAA CAATATGGGG TGGTACCTAT AGGTCTGGAA ACACTTTACT GACTCTGTGA GGCATACCAG GAGACGTCAG 003200
003201 AGAACAGTCC CTCCTCAAAT GCCAAATGAG ATGCAGAAGA AATAGTTTGC TCAAGTTCAT GGGCCAGATA TCCCAGTGGT 003280
003281 CAGGGAGTTT CATGAATGAG ATGGAACTTT GCATGGAACC CGAGGGATGT GTATGATTTG AGTAGATGAA GAAAATGAGA 003360
003361 CTTTCCAAGC AGCTAGAAGT TAGGGAGCAG CAAGATGTGT GGTGGGATTG AGCACAGTTG GTTCAGAGGA TAGACTGCAG 003440
003441 TTTTAATAAT TTGTAGTAAA TATCTCCCAA CTGTTTGGCA CTATTGGAGC AAGTTCTTGA ATGCCAAATG AAGGCATAAA 003520
003521 TCAGTAAGAG GCATAATAAA AGGCTGAGCA GTGCTTGGCT TTTTACGAAC TGATCCTGAT AGGAGCAGCT GTTCAACAAA 003600
003601 GTTGCCAGGT CACCGTTACA TAGTCCCTGC CTTCTAGGGG CTCACTGCCT ACTGGGAGAG ACAGTCTGAA AGTTGGTGGA 003680
003681 GCATGTAACT GTTGGATGAG GAGTTTGAGC CTGTGGACTG TGGGACCCCC GAGGAGGGTG TGGCTACTCT AGGCAGAACA 003760
003761 ATCCCACAGT TTATTTATAT TTAACCTTGA AATTCATTAG AGGATTTTTC AGCAGAGGTT TGGTACTTGT TAATGTTAAG 003840
003841 GTTTGCATTC TCTAGAACCT CAAGGAAAGC TGTACCGTGC ATAATGTACC CTCTTATGTT AATGTTGTGT ACTGTGATCC 003920
003921 TGTTTCAGGG ACTTGCACTT AGGAATCTGT TACAGTGAGC ACAGAAGCAG ACCTGTGGGC TCATAGTCTT CACCCCCCAC 004000
004001 CCATATATAC AAGATGAACA GAGTGGAGGT TAAACAACTT GACTAAACAA CACAGTTCAT GGTAAAGCCC AAGACTGTAC 004080
004081 CTGCCCATCC ACTGCCTTTT CCATGTATCC TGGAACTGAG CATAGACCTC TTCCCAGGCA GAGCTGACAG CAAGTAAAGG 004160
004161 AGATCATAAT CAGGGGACCA AACAACTTTG TCTAAAGTGT GAATGTCACC TAAGGAGAAG CTGTGAGATC AGAAGGGTGG 004240
004241 GGCAGAGGAG CAGACACCAT GAGGGAGAGT CCTTGGGGGT ACATCTGCCA GACTGACACT GTCTGGCCTG GGCAGTGGAG 004320
004321 GGGCTAGCAG GAACCACAGG TACTGGTGGT GTGGCTACTA CCGTTACAAC TGCCTGTGCT TGGACATGGA CCCTCTGCAA 004400
004401 TATGCGGCAG TTTCATTCAT TGCCCCCTAC ATTCTACACC AAGTAGAAAT GGAAGGCAAT TGGATACTTC ACAGACAAGA 004480
004481 TCTAAGTGGA GAAGGAATGC GTCCTGTGGC TGCAGAGATC CTTGGAGCTT GGAGGGGAGA GCTTGAGCCC CACTGATGAT 004560
004561 GACCTCCCAC AGCTCGCCAA CTCAGCCCTC CCTAAGTCCC CATCGGGGGC CAATTCTCAC TCTGGGGTTG GGGGGACTCC 004640
004641 ACCATAGCTC ATCCATCATA GGGATGTTGG TATCTACTGT GGGTTGGGTA GGGCCGATGT GCTGAGGATG GCTCCCCCAC 004720
004721 AAGCAAGAGA TGTGGATTTG GGGAGCTTCC CATCTTGTGT TGAAGGAACA TAACTCAGAA TAATAAGAGC CAACTATAAC 004800
004801 AAACCCACAG CCAACATCAT ACTGAATGGG CAAAAGCTGC AGGCATTCCC CTTGAAAAGT GGCACAGGAT AAGGAAGCCC 004880
004881 TTTCTCACCA CTCCTATTCA ATATAGTGTT GAAAGTCCTG ATCACAGCAG TCAGGCAACA GAAATAATAA AGGGCATCCA 004960
004961 AATAGGAAGA GAGGAAGTCA AACTATCCTT GTTTGCAGAC AGTATGATTC TATATCTAGA AAACCCCATA GCCTCAGCCC 005040
005041 AAAAGGTCCT TCATCTGATA ATTTCAGCAA AGTTTCAGGA GACAAAATCA GTGTACAAAA ATCACTAACA TTCCTATACA 005120
005121 CAGTCGCCAA GCCAAGAGCC AAATCAGGAG CACAATCCCA TTCATAATTG CCACAAAAAA GAATAAAATA CCCAGGAATG 005200
005201 CAGCTAACCA AGGAAGTAAA GGATCTCTAC AATGAGAATC ACAAACGCTG CTCAAAGAAA TCAGAGATGA CACAAACAAA 005280
005281 TGGAAAAACT TTCCATGCTC ATGGCTAGGA AGAATCAATA TCATTAAAGT GGCCATACTA CCCAAAGCAA TTTATAGATT 005360
005361 CAATGCTATT CCTATCAAAC TATCAATTAC ATTTTTCACA GAACTAGAAA AAACTTAAAA TTCATATGGA ACCAAAAAGC 005440
005441 CTGAGTAGTC AAGGCAATCC TAAACAAAAA GAACAAAGGT GGAGGCATCA CATTACCTAA CTTCAAACTA CAGGGCTACC 005520
005521 ATGACCAAAA CAGCATGGTA CTGGTACAAA AGCAGACACA CAGACCAGTG GGACAGAATA GAGAGCCCAA AAATAAGGCC 005600
005601 ACAAACCTAC AGCCATCTGA TCTTCAACAA AGTTGACAAA AACAAGCAAT GGGGAAAGGT CTCCCTATTC AATAAATGGT 005680
005681 GCTGGGATAA CTGGCTGGCC ATATGCAGAA GATCGTAACT GGACCCCTTT TACTATGTAC AAAAATTAAG ATGGTTTAAA 005760
005761 GAGTTAAAAC CCAAAATTAT AAAAATCCTG AAGATAACTT AGGCAATACC ATTCTGGACA TAGGAACTGG CAAATATTTC 005840
005841 ATGATGAAGA CACCAAAAGC AATTGTAACA AAAGCAAAAA TGGACAAATT GGATTTAAGA GCTTTTTCAT AGCAAAATAA 005920
005921 ACAACAGGGC AGACAATCTA CCAAATGACA GAAAATTTTT GCAAACTATG CATCTGACAA GGGGCTAATA TCTAGCATCT 006000
006001 ATAAGGAATT TAAACACAGT TACAGG
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Predicted Small Protein

Name NONHSAT108615_smProtein_4385:4555
Length 57
Molecular weight 6344.1756
Aromaticity 0.0892857142857
Instability index 41.1321428571
Isoelectric point 4.80377197266
Runs 7
Runs residual 0.0282982045277
Runs probability 0.0439346909936
Amino acid sequence MDPLQYAAVSFIAPYILHQVEMEGNWILHRQDLSGEGMRPVAAEILGAWRGELEPH
Secondary structure LLHHHHHHHHHHHHHHHHHHHLLLLEEEEELLLLLLLLHHHHHHHHHHHHLLLLLL
PRMN -
PiMo -