NONHSAT108615
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT108615 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
6026 nt |
Genomic location |
chr6-:30255174..30294150 |
Exon number |
4 |
Exons |
30255174..30260376,30262248..30262741,30263909..30264014,30293928..30294150 |
Genome context |
|
Sequence |
000001 TTTTAACATT CAAGGATTAG GTAAGTTCTC CCCGCGGTAG ACTTCAAATA CTCTTTGTCC TGCCCCTGCT TGGCGAAATT 000080
000081 TACCGAAATT ATCTACCTAT CCCGCTGGAG TGGGAGCCGG GGGAGAGCTG GAACCGCGTC TCTGCTGCTC ACCTTTGTGT 000160 000161 CCTTAGCTCC TTCGCATGGG GTCCGACCGC AACACGTGCG CTGGATAAAC GCTTGTTAAC TGGAGCTCCC TCTTTGCCCA 000240 000241 CTAGCAGGGC ATTAGCTGGT GCTGAAGACA GTGGCTGCTT GGCGAGCCTG GATCTCCAAG TGACCCCCTC AGCAACTCCT 000320 000321 GATGAACAGG ACTGAAGCCA ATATTAAAGC AAGTCAACCA AAGGTTCTCT GGTGTAGACA AGACAGCAAA AGGACAGACT 000400 000401 ACCTTGTGGA ACCTAGCATT GTTCTCCTTC TGCAGCACTA AGTAACATTT GTTCTCCGTT AAGATCTTTG CAAACCACAC 000480 000481 ACAAGAATTG CTGGTCATCC TGCCAATAGA TGCTGCTCAC AGAACCAAAT TTCCTGTGCT GAATTGTCAC TCATGGGCTT 000560 000561 GAGAGTAGGA GACTGGAGAC CAAGGTGGCT AGAATCCAGT TGGGCCTGAT GTCTCCCTGT TGAAAGGGCT CCTTGTGGAA 000640 000641 TGAATAGCAC ATGGCTCCTG TGGTGGATCT GATAGTGGCA TAGCACCAAG TGATGCAGGC CTGCCAGGGG CCACAGACAC 000720 000721 AGAAGATGCT CCCGGGGTCC CCCATGTACT CCAGACACAC TGCAGGCCAC CTCTCCCAGC AGGTTGCCAG TCATGGGCCC 000800 000801 CATCATCATG ACTTCTGTCC AAGGTACTGT GTGCAGAAAT GTGATTGAGA TTCAAGTCAG GGCCTCTCTG CCCTTTTCCC 000880 000881 TCCAGAAACA AAACCAAGAT AATTTATCCT GAACACGGTG AAAAAAGGAA GGGAGGGAGG AGAAAAAGTC CGGGTCTCAC 000960 000961 CTGGGATTCT CTGTCTCCTG CAACATGAAG GATTTAGCCT GGGAGGAGGT GGTGAGAACT CTGGGAGAGA AAAAAGAAGG 001040 001041 AAAGAATAGT TTTACCCATG CTGAAGTTAA TTTAAACCTT CACCTAGAGA AGCAAAAAAA AAAAACCCAC ACTTTCCCAT 001120 001121 TTTGTGCCTC CCTTCCTAGA GTTTTAGCCA AAGGTTTAGC TAAGTAATTG GTTTTACCAG CGCACTCACT CCTCCTATCC 001200 001201 CAAGTCTGTT TGACTCCCTC CCCATCATCC TCCTCACCTC TTTTCAGGCA GGGTGGGGAT AGCAGCAGGA GGAGATTTTG 001280 001281 GGAGCCTGGC AACTCCTGCA AGGACCGCAG GACAGCCCCT CTGTGGGGAT GCGTGGTGCC CCATCTGCCG CCCTTCTGAA 001360 001361 GAATGCACTG CCTTCACTTT TTACTGTGTT AGAGTCCATC CAGACTGTTC TATCCAAAAA AGTTTCTTTT TCCCCCACAG 001440 001441 GCAATCAGGA AATGATTCCT TTCCCGACTG CTTCTGTCTA GTGCCTGGGA ATCTTGAGTC AATCCCTCAG TAAGTCAGTG 001520 001521 ACTAGGGAAA TCCCTCTCTG AGCCTCCCAG TTCATGTTGC TTAGGGAACC TGATATTTTC GTGAAACCTG CCTACACATG 001600 001601 GGCAGCCCAA CAGCAGAACA AATGGTGGTG ACCAAAGTGA ACAAAGAAGT ATAGTTGTGC CAGCTTCGTA GTTGCCCATG 001680 001681 TGGACAAGTC AGCAGGATCA GGACACGAGG AAGAGTAAAT GTGAGACAGT CAATGTGACT TCTGCGATAA ACAGATTTTT 001760 001761 AAACCCCGAA ATTTTGCAAA ATTTTGGTGA AACCTGAACT TTCTTCGTTG CATATACTGG CACTATCTGT ACCATCATAC 001840 001841 AACTGTCTCA CATTAAAGCT ATTTTTCTTG GGCACTGATG AGTAAGGTTG GTATAAGTTC CTCAGATCAA CAAAAACCCA 001920 001921 TTTTCCTGTA AGTCTTACAT TTAGTATTTA AGGAACTAAA ACTTAAATAC ATTTTGTGAA ATGGTTGACA CTTCACTGAT 002000 002001 AATGATTTAT TGCTTGGATT AATAAATTTT CCAAAAGTTG TCTTATGTAG AATATGGTTT GCAACCAGCA GAACCATTAA 002080 002081 TCTATACTGC AATGATATGC ACTATGTATA ATTGTTTAAA AGCCTCTACT TAATGATGTA AAATGCTCTA TTTAATTACA 002160 002161 CATTTGGGTA AACTGTATAC TAACATCTGA TGGCATTTTT CCACTGTTTG TTGCTTTTTT CAAATACTTT ATTGTACAAA 002240 002241 GCTGTTCTTA ATATTTTTCA AGTTTTTTTC TTTGAATTTT GCTAATGTTT TCCTTGAATT ATGAGCACTG ACAGAATGTG 002320 002321 CTTAGCACTT TTGGCTATTC ACACAGCTTT TGAGCATGAT TTGCATCCAA TATTTACATT GCTAGCAATA ATAAGCCATC 002400 002401 TGTGAGTTTT GTCAAAAGTT ATTGGGGATT TTTTAAATTT TAGAAATGCA AATTATTGTT TCTTTGAACT AACTCTTATG 002480 002481 CAGTTGCAAA GGCATTTCCA GTTGTTATAG TTTGTGTACA ATATCAGGTG TTCCAGATTA TGATTCATTA TTAATATCAT 002560 002561 TGCTTCCTTG TTCCCTCTGA GGTCCAGAAG ATTCATGTTT ACAATATTTA GAAACAATGT TAAAAAGGTA TCCAAAGTTT 002640 002641 GTCACTTTAT TATTAGTTTG TTCTTAATAT TCTGTTTAAG TTTTTGAATT CATAGATATC AAAACGCTGC ACAATTATGA 002720 002721 TTTCCACAGG AATAACAACA CACTAACAAT AAGAACCAAA AACAGCAAAT AGGCTGCCTA CAAGTTTTGA CAATATTAGG 002800 002801 ATAATGATAA TGACAGTTTT TCTAAATCTC ACAGTAAAGA ATGCAGCAAC CCAGCAACAC TGCTACCTGT GGCCTCAGGC 002880 002881 TGCAGTGTCA GCTCTTCCCT GGGTCTCCAG CCTGCCAGTC TAACCTGAAA ATTATGTACT TGCCAGCCCC CACAGTCACG 002960 002961 TGAGTGAACT GGCCCAGGCT GGTCACCAGG GTCAGTTTCT CTGTGTGTCA TTAATTCATT CAGTCTTCAG CAGTCTCTTT 003040 003041 GGAGCTGAGA TGTACCTACC ATCTGCCTTT TGGGTGCTTA GGGTGGAGAA CCAGAAAAGT ATAACCTAGT GTGTATCCTC 003120 003121 AAAGAGCTAA CAATATGGGG TGGTACCTAT AGGTCTGGAA ACACTTTACT GACTCTGTGA GGCATACCAG GAGACGTCAG 003200 003201 AGAACAGTCC CTCCTCAAAT GCCAAATGAG ATGCAGAAGA AATAGTTTGC TCAAGTTCAT GGGCCAGATA TCCCAGTGGT 003280 003281 CAGGGAGTTT CATGAATGAG ATGGAACTTT GCATGGAACC CGAGGGATGT GTATGATTTG AGTAGATGAA GAAAATGAGA 003360 003361 CTTTCCAAGC AGCTAGAAGT TAGGGAGCAG CAAGATGTGT GGTGGGATTG AGCACAGTTG GTTCAGAGGA TAGACTGCAG 003440 003441 TTTTAATAAT TTGTAGTAAA TATCTCCCAA CTGTTTGGCA CTATTGGAGC AAGTTCTTGA ATGCCAAATG AAGGCATAAA 003520 003521 TCAGTAAGAG GCATAATAAA AGGCTGAGCA GTGCTTGGCT TTTTACGAAC TGATCCTGAT AGGAGCAGCT GTTCAACAAA 003600 003601 GTTGCCAGGT CACCGTTACA TAGTCCCTGC CTTCTAGGGG CTCACTGCCT ACTGGGAGAG ACAGTCTGAA AGTTGGTGGA 003680 003681 GCATGTAACT GTTGGATGAG GAGTTTGAGC CTGTGGACTG TGGGACCCCC GAGGAGGGTG TGGCTACTCT AGGCAGAACA 003760 003761 ATCCCACAGT TTATTTATAT TTAACCTTGA AATTCATTAG AGGATTTTTC AGCAGAGGTT TGGTACTTGT TAATGTTAAG 003840 003841 GTTTGCATTC TCTAGAACCT CAAGGAAAGC TGTACCGTGC ATAATGTACC CTCTTATGTT AATGTTGTGT ACTGTGATCC 003920 003921 TGTTTCAGGG ACTTGCACTT AGGAATCTGT TACAGTGAGC ACAGAAGCAG ACCTGTGGGC TCATAGTCTT CACCCCCCAC 004000 004001 CCATATATAC AAGATGAACA GAGTGGAGGT TAAACAACTT GACTAAACAA CACAGTTCAT GGTAAAGCCC AAGACTGTAC 004080 004081 CTGCCCATCC ACTGCCTTTT CCATGTATCC TGGAACTGAG CATAGACCTC TTCCCAGGCA GAGCTGACAG CAAGTAAAGG 004160 004161 AGATCATAAT CAGGGGACCA AACAACTTTG TCTAAAGTGT GAATGTCACC TAAGGAGAAG CTGTGAGATC AGAAGGGTGG 004240 004241 GGCAGAGGAG CAGACACCAT GAGGGAGAGT CCTTGGGGGT ACATCTGCCA GACTGACACT GTCTGGCCTG GGCAGTGGAG 004320 004321 GGGCTAGCAG GAACCACAGG TACTGGTGGT GTGGCTACTA CCGTTACAAC TGCCTGTGCT TGGACATGGA CCCTCTGCAA 004400 004401 TATGCGGCAG TTTCATTCAT TGCCCCCTAC ATTCTACACC AAGTAGAAAT GGAAGGCAAT TGGATACTTC ACAGACAAGA 004480 004481 TCTAAGTGGA GAAGGAATGC GTCCTGTGGC TGCAGAGATC CTTGGAGCTT GGAGGGGAGA GCTTGAGCCC CACTGATGAT 004560 004561 GACCTCCCAC AGCTCGCCAA CTCAGCCCTC CCTAAGTCCC CATCGGGGGC CAATTCTCAC TCTGGGGTTG GGGGGACTCC 004640 004641 ACCATAGCTC ATCCATCATA GGGATGTTGG TATCTACTGT GGGTTGGGTA GGGCCGATGT GCTGAGGATG GCTCCCCCAC 004720 004721 AAGCAAGAGA TGTGGATTTG GGGAGCTTCC CATCTTGTGT TGAAGGAACA TAACTCAGAA TAATAAGAGC CAACTATAAC 004800 004801 AAACCCACAG CCAACATCAT ACTGAATGGG CAAAAGCTGC AGGCATTCCC CTTGAAAAGT GGCACAGGAT AAGGAAGCCC 004880 004881 TTTCTCACCA CTCCTATTCA ATATAGTGTT GAAAGTCCTG ATCACAGCAG TCAGGCAACA GAAATAATAA AGGGCATCCA 004960 004961 AATAGGAAGA GAGGAAGTCA AACTATCCTT GTTTGCAGAC AGTATGATTC TATATCTAGA AAACCCCATA GCCTCAGCCC 005040 005041 AAAAGGTCCT TCATCTGATA ATTTCAGCAA AGTTTCAGGA GACAAAATCA GTGTACAAAA ATCACTAACA TTCCTATACA 005120 005121 CAGTCGCCAA GCCAAGAGCC AAATCAGGAG CACAATCCCA TTCATAATTG CCACAAAAAA GAATAAAATA CCCAGGAATG 005200 005201 CAGCTAACCA AGGAAGTAAA GGATCTCTAC AATGAGAATC ACAAACGCTG CTCAAAGAAA TCAGAGATGA CACAAACAAA 005280 005281 TGGAAAAACT TTCCATGCTC ATGGCTAGGA AGAATCAATA TCATTAAAGT GGCCATACTA CCCAAAGCAA TTTATAGATT 005360 005361 CAATGCTATT CCTATCAAAC TATCAATTAC ATTTTTCACA GAACTAGAAA AAACTTAAAA TTCATATGGA ACCAAAAAGC 005440 005441 CTGAGTAGTC AAGGCAATCC TAAACAAAAA GAACAAAGGT GGAGGCATCA CATTACCTAA CTTCAAACTA CAGGGCTACC 005520 005521 ATGACCAAAA CAGCATGGTA CTGGTACAAA AGCAGACACA CAGACCAGTG GGACAGAATA GAGAGCCCAA AAATAAGGCC 005600 005601 ACAAACCTAC AGCCATCTGA TCTTCAACAA AGTTGACAAA AACAAGCAAT GGGGAAAGGT CTCCCTATTC AATAAATGGT 005680 005681 GCTGGGATAA CTGGCTGGCC ATATGCAGAA GATCGTAACT GGACCCCTTT TACTATGTAC AAAAATTAAG ATGGTTTAAA 005760 005761 GAGTTAAAAC CCAAAATTAT AAAAATCCTG AAGATAACTT AGGCAATACC ATTCTGGACA TAGGAACTGG CAAATATTTC 005840 005841 ATGATGAAGA CACCAAAAGC AATTGTAACA AAAGCAAAAA TGGACAAATT GGATTTAAGA GCTTTTTCAT AGCAAAATAA 005920 005921 ACAACAGGGC AGACAATCTA CCAAATGACA GAAAATTTTT GCAAACTATG CATCTGACAA GGGGCTAATA TCTAGCATCT 006000 006001 ATAAGGAATT TAAACACAGT TACAGG |
Predicted Small Protein
Name | NONHSAT108615_smProtein_4385:4555 |
Length | 57 |
Molecular weight | 6344.1756 |
Aromaticity | 0.0892857142857 |
Instability index | 41.1321428571 |
Isoelectric point | 4.80377197266 |
Runs | 7 |
Runs residual | 0.0282982045277 |
Runs probability | 0.0439346909936 |
Amino acid sequence | MDPLQYAAVSFIAPYILHQVEMEGNWILHRQDLSGEGMRPVAAEILGAWRGELEPH |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHLLLLEEEEELLLLLLLLHHHHHHHHHHHHLLLLLL |
PRMN | - |
PiMo | - |