NONHSAT108614
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT108614 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2440 nt |
Genomic location |
chr6-:30255174..30294933 |
Exon number |
4 |
Exons |
30255174..30260376,30262248..30262741,30263909..30264014,30294131..30294933 |
Genome context |
|
Sequence |
000001 TGGAGTTTTT AGCCTTTTAA CATTCAAGGA TTAGAGCTCC CTCTTTGCCC ACTAGCAGGG CATTAGCTGG TGCTGAAGAC 000080
000081 AGTGGCTGCT TGGCGAGCCT GGATCTCCAA GTGACCCCCT CAGCAACTCC TGATGAACAG GACTGAAGCC AATATTAAAG 000160 000161 CAAGTCAACC AAAGGTTCTC TGGTGTAGAC AAGACAGCAA AAGGACAGAC TACCTTGTGG AACCTAGCAT TGTTCTCCTT 000240 000241 CTGCAGCACT AAGTAACATT TGTTCTCCGT TAAGATCTTT GCAAACCACA CACAAGAATT GCTGGTCATC CTGCCAATAG 000320 000321 ATGCTGCTCA CAGAACCAAA TTTCCTGTGC TGAATTGTCA CTCATGGGCT TGAGAGTAGG AGACTGGAGA CCAAGGTGGC 000400 000401 TAGAATCCAG TTGGGCCTGA TGTCTCCCTG TTGAAAGGGC TCCTTGTGGA ATGAATAGCA CATGGCTCCT GTGGTGGATC 000480 000481 TGATAGTGGC ATAGCACCAA GTGATGCAGG CCTGCCAGGG GCCACAGACA CAGAAGATGC TCCCGGGGTC CCCCATGTAC 000560 000561 TCCAGACACA CTGCAGGCCA CCTCTCCCAG CAGGTTGCCA GTCATGGGCC CCATCATCAT GACTTCTGTC CAAGGTACTG 000640 000641 TGTGCAGAAA TGTGATTGAG ATTCAAGTCA GGGCCTCTCT GCCCTTTTCC CTCCAGAAAC AAAACCAAGA TAATTTATCC 000720 000721 TGAACACGGT GAAAAAAGGA AGGGAGGGAG GAGAAAAAGT CCGGGTCTCA CCTGGGATTC TCTGTCTCCT GCAACATGAA 000800 000801 GGATTTAGCC TGGGAGGAGG TGGTGAGAAC TCTGGGAGAG AAAAAAGAAG GAAAGAATAG TTTTACCCAT GCTGAAGTTA 000880 000881 ATTTAAACCT TCACCTAGAG AAGCAAAAAA AAAAAACCCA CACTTTCCCA TTTTGTGCCT CCCTTCCTAG AGTTTTAGCC 000960 000961 AAAGGTTTAG CTAAGTAATT GGTTTTACCA GCGCACTCAC TCCTCCTATC CCAAGTCTGT TTGACTCCCT CCCCATCATC 001040 001041 CTCCTCACCT CTTTTCAGGC AGGGTGGGGA TAGCAGCAGG AGGAGATTTT GGGAGCCTGG CAACTCCTGC AAGGACCGCA 001120 001121 GGACAGCCCC TCTGTGGGGA TGCGTGGTGC CCCATCTGCC GCCCTTCTGA AGAATGCACT GCCTTCACTT TTTACTGTGT 001200 001201 TAGAGTCCAT CCAGACTGTT CTATCCAAAA AAGTTTCTTT TTCCCCCACA GGCAATCAGG AAATGATTCC TTTCCCGACT 001280 001281 GCTTCTGTCT AGTGCCTGGG AATCTTGAGT CAATCCCTCA GTAAGTCAGT GACTAGGGAA ATCCCTCTCT GAGCCTCCCA 001360 001361 GTTCATGTTG CTTAGGGAAC CTGATATTTT CGTGAAACCT GCCTACACAT GGGCAGCCCA ACAGCAGAAC AAATGGTGGT 001440 001441 GACCAAAGTG AACAAAGAAG TATAGTTGTG CCAGCTTCGT AGTTGCCCAT GTGGACAAGT CAGCAGGATC AGGACACGAG 001520 001521 GAAGAGTAAA TGTGAGACAG TCAATGTGAC TTCTGCGATA AACAGATTTT TAAACCCCGA AATTTTGCAA AATTTTGGTG 001600 001601 AAACCTGAAC TTTCTTCGTT GCATATACTG GCACTATCTG TACCATCATA CAACTGTCTC ACATTAAAGC TATTTTTCTT 001680 001681 GGGCACTGAT GAGTAAGGTT GGTATAAGTT CCTCAGATCA ACAAAAACCC ATTTTCCTGT AAGTCTTACA TTTAGTATTT 001760 001761 AAGGAACTAA AACTTAAATA CATTTTGTGA AATGGTTGAC ACTTCACTGA TAATGATTTA TTGCTTGGAT TAATAAATTT 001840 001841 TCCAAAAGTT GTCTTATGTA GAATATGGTT TGCAACCAGC AGAACCATTA ATCTATACTG CAATGATATG CACTATGTAT 001920 001921 AATTGTTTAA AAGCCTCTAC TTAATGATGT AAAATGCTCT ATTTAATTAC ACATTTGGGT AAACTGTATA CTAACATCTG 002000 002001 ATGGCATTTT TCCACTGTTT GTTGCTTTTT TCAAATACTT TATTGTACAA AGCTGTTCTT AATATTTTTC AAGTTTTTTT 002080 002081 CTTTGAATTT TGCTAATGTT TTCCTTGAAT TATGAGCACT GACAGAATGT GCTTAGCACT TTTGGCTATT CACACAGCTT 002160 002161 TTGAGCATGA TTTGCATCCA ATATTTACAT TGCTAGCAAT AATAAGCCAT CTGTGAGTTT TGTCAAAAGT TATTGGGGAT 002240 002241 TTTTTAAATT TTAGAAATGC AAATTATTGT TTCTTTGAAC TAACTCTTAT GCAGTTGCAA AGGCATTTCC AGTTGTTATA 002320 002321 GTTTGTGTAC AATATCAGGT GTTCCAGATT ATGATTCATT ATTAATATCA TTGCTTCCTT GTTCCCTCTG AGGTCCAGAA 002400 002401 GATTCATGTT TACAATATTT AGAAACAATG TTAAAAAGGT |
Predicted Small Protein
Name | NONHSAT108614_smProtein_503:658 |
Length | 52 |
Molecular weight | 5718.4352 |
Aromaticity | 0.0588235294118 |
Instability index | 51.4647058824 |
Isoelectric point | 8.48272705078 |
Runs | 7 |
Runs residual | 0.0169869928169 |
Runs probability | 0.0405026875615 |
Amino acid sequence | MQACQGPQTQKMLPGSPMYSRHTAGHLSQQVASHGPHHHDFCPRYCVQKCD |
Secondary structure | LLLLLLLLLLLLLLLLLLLLHHHHLHHHHHHHLLLLLLLLLLLLLEEEELL |
PRMN | - |
PiMo | - |