NONHSAT107831
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107831 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2735 nt |
Genomic location |
chr6-:14280370..14285977 |
Exon number |
4 |
Exons |
14280370..14281382,14282640..14283421,14284176..14284413,14285276..14285977 |
Genome context |
|
Sequence |
000001 TCTTGTTTAC ATGCTTTTCA TGAAGCCCTT ACAAAGAAAA CCAAGAACAA TTCCTCAAAA CTCCATGCAC AGCTTCCTCT 000080
000081 TTGTGGATCC TGAGACTTCG GATGCTGGGA CTAACTAGCC ACTCACCGAG TCAAAGCTGG TGTGCAGAGA AAACCATTTC 000160 000161 TCTCTTGTTA AATGACCTCG CTTCATCATA AAACCTTAAA AAGAAAGCTT CCAGATCATT TGTCTCCATC ACAAAACTTA 000240 000241 TAAAAATGAG ATGGAAAAAA AGTTAAATTA TTTTGGCTCA TAAGTTTCAG ATGGAGTTGT ATATTTCCCT AAAGGGTCAA 000320 000321 AAATAGAACA TTTATTAAAC GACGAGTTAT TCAAAAACCG GCACAGGCCC CAGTTGTCTT TCAAAAGCTC TGATTTACTG 000400 000401 CATATTTCTC CCTTGAGAAA GGCCTTTTTT AAATGTTCAT TTCCATTTTA AGAGACTGTG GGCTTTGATC TGTTGGGAGC 000480 000481 ATTCTTTTTC TTTCCCTGAC TGGGGCCTGT CGGCTACTCA GGCCTGTGTT TTTCCATGGC CTTCCCCAGC ATTCACACGG 000560 000561 CATCTCCTGC ATCTGCGTTC ACCCTGGCTA ATTTGGAGGT CAGAACTGGT GAGTCCCTGT AGCAGGTGAC ACCAAGAACC 000640 000641 AATGAGCCAT ATTTGCTCTT CACACCTCAA CAAAGATGCT GCTTCCAGGA GGTAAGAGAA AGAGTGAGTG TTTGTGTAAG 000720 000721 TTTCAAATCC AGCAACCTGA AGATTCGCCT CCAATGGCAC AGGGCTGGAC CGCACTCAGA GGTGGCTGCC ACCCAATCGT 000800 000801 CACTCAGCGT TTTATCGCTG GGCTATTCTG TTCGAGTGCT AAGCAATTGT TCACAGAAAT AAGATAATGG AAAGAGCAGA 000880 000881 GACAGAATGA GCAATGGAGA GAGTCGGGCC TACCATCGCG CTTACTGCTG TTCGTCACAG AGATCTGCAA GAACTCTGAA 000960 000961 CTCATAGATT ATGTCCAAAC TGAGAAGCAC TGGACAGTCA TTTTGCTTAT CTGCGGTTTC TCATTTCTGA GAAGAATCTC 001040 001041 CATATGGACA TTATCACTTT TGTTATAATC TCGAGGATGG TTAAGGTAGC TTTGATCGCC ACTTTCATAT CTCCTGTGAT 001120 001121 AATCAGCACC AATGGAATGT GCAGAAATCC ATCCCTATTC CTAAGGACTC CTGATGTCAT CTCACCAGGT GGGACGGTTT 001200 001201 GTCCTGCTCG AGTCTGCACG CCCAGCTCCA ACAGCTTCGC CCAAGTTTGG GGACAGGCTT CACCCAACAC CCAGAATCTG 001280 001281 TGCAGTTATT TGGCCCCTCA TTGAAAAGCC TCTCACGGTT ACAGACAAAA TTAACTTGGT CATCCCTGCA GCGCCGGAGG 001360 001361 GATACTTCTG GACTCTCTGT TTGGGGAGTG TACGCTCAAA CCGTTTCAAG AAGAGATTTA AACCTCTTCT TGGAGAAGAC 001440 001441 TGAGGCTGGC ACAAGGCTAA CAAATCAAAT AACTGCACCG AGGCAAAGCT GCCGTCTCTC CCGGGCTGTA CCCTGCCTGC 001520 001521 TTCTCCCATC CCTGCCTTCT GGCCGATTTG TCTTTAAGGT TTTAGCATTA TCCCTCTGTT GACAAATGAA TGCTTTTCTG 001600 001601 GAAGATGAGG TATTTCCAGA AGCAGGCAGA CACTGGCTGG AGCGCCGTAA GAGCTCTGCC TCCCTCGATT CGTTATGTGA 001680 001681 ACGGGAGAGG CCTGGAGGTT TTGCGCGAGC ATTACGTTCA AGAATGGATC TCTGATGCCT GCCCACCACG CGGCTGGAGT 001760 001761 GGCGCCAGCA TCCCCAGGGC ACGTCTGTGA TGACCGATGA GGTCCACCAC CTCTACCCCA GACCCTCCCA TACCCAAAGG 001840 001841 CTCCCTCTGC CCAGTGAAGT CCCCTTCGCC CCAGCATTCC TGCACCAGGC ACATCCCAAG GGTGGCCCCG TGTCCTGCAG 001920 001921 GTGGCAGGAG AGTGCACCCT CCTCAGACAC CAGTCTGATA TGTCACCAGG AGAGAGCGGG CGGTCCTCAG TGTATGCTCT 002000 002001 TTTCTTGTCT CTGGGGAGCT TGTTTTGGCT CCTCAAGAAG ACCTTGGAAA AAGCACAGGT TGTAGAGGCG GCATTCGCCG 002080 002081 GGCAGAACCA TGTCCCAAGA CAACTGGTTA GTGAGGCCAG GCGTGACAAT CATAATCGGA GCAGCAACTG TGCAATGGCA 002160 002161 TAGGCAAAGG GGGCCGAAGG CGCAGCAGCC ACCACCATTA TAGTCAGACT GGGCACCGTT TCCTAAATGT CACACATCCT 002240 002241 TCCAGCCCCT TGATCTTTGC TTATGAAAAG GGTCATTCCC TCTACAATCC TCTAGAACTC TTTGTAGGTT TTTGTTTGTT 002320 002321 TTCCAAACAC TGTACTTGCT TCTTTATCTG TCTCTCTATG AACCGTGAGT CCCAGAGGAC CTCGTGGTCC TCAATTATCC 002400 002401 TTGCTTCTCT GTGGCCTGTG CCATGGGGCT GAATGTTTGT AGCCCCCAGA ATCCATATGT GGAAGCCCTA ATCCCCACTG 002480 002481 TGCTGGTATT AGGAGGTGGG GCCTTTGGGA TGTGATTAGG GTTAGATGAG GGCATGAGGG TGGGGCCCTC ATAATGAGAT 002560 002561 TAGTGACCTT ATCAAGAGGA TGAGACACTA GATCCCTTGC TCCCTCTCTG CCTGCAATCA CCAGTGAAAG GCCAAGTGAG 002640 002641 GACATAATAG AAGCCATCCC TTCCCAGAAC CCAGCCATGC TGGCACCCTG ATCTCTAGCT TCTCAGCCTC CAGAACTGTG 002720 002721 AGAAATAAAT GTCTG |
Predicted Small Protein
Name | NONHSAT107831_smProtein_1043:1303 |
Length | 87 |
Molecular weight | 9224.7319 |
Aromaticity | 0.0697674418605 |
Instability index | 43.9348837209 |
Isoelectric point | 8.93499755859 |
Runs | 22 |
Runs residual | 0.116192294342 |
Runs probability | 0.0248149218738 |
Amino acid sequence | MDIITFVIISRMVKVALIATFISPVIISTNGMCRNPSLFLRTPDVISPGGTVCPARVCTP SSNSFAQVWGQASPNTQNLCSYLAPH |
Secondary structure | LLEEEEEEEELLLHHHEELEELLLEEEELLLLLLLLLLEELLLLEELLLLEEELLEEELL LLLLLLEEEEELLLLLHHHHHHLLLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiii |