NONHSAT107644
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT107644 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2660 nt |
Genomic location |
chr6+:8784260..8787078 |
Exon number |
2 |
Exons |
8784260..8784939,8785099..8787078 |
Genome context |
|
Sequence |
000001 AAAACAAATA AATTTTCTGT CCAATTCCTG GAATAAAACA TGAGAAATGA CAGTTCACAG TATCCGTTAA AACAAATAAA 000080
000081 TTTACAGGAA TACTTAAAAT TCATACAATG TGAGATTTTT TCCAGAAACA AGTCATACCC ACTCATTCCT AAGTTAACCA 000160 000161 ACAGGACACA GCCCTGGTGA TGGCTTTCTG AGGATGACAC GATGGAGGCT TCTCCAATAG CTCTAAAACT GCGGTGTGGA 000240 000241 AAACATTCGG CAGCCTCAAA GAGCGGTCTT GTTGACCCCA ACTATATCAT TTTTCATCAA AATCATTCTT GGTAAGTCTT 000320 000321 ATGCCCAAGG AGTTATTTTC CTTAGCAACA TCATGGTATG GAGGGATTTG CTATAGGATA GGTCCTGAAT ATTCTTGCTT 000400 000401 TTTTTCTGAC TTAACTTTGA AAAGAAGTCC TAGACTAAAT TCAACCCTGC TCTTTCAAAT AGCTTCCTCA AAAATATAAA 000480 000481 AAAAATCTTT TAAGTCTGCT TTTCTCTGCA CATGGCCCTC TACACAACAT CCATAGATAC AGTAGAGACA TAGATGAAAG 000560 000561 ATGGGTGTAA CCGAGAACAG GTTTGTATAC CAATTTCCAT AATTATCAAT GTATCAGATT TTATAGATTG ATAAGGAAGC 000640 000641 GTGGGCCCCA AGGTAGGCAT TATCTTTGGC CTGTTGATTG ATCAGTGAGG TGAAGTGGAT ATAAGAAAAA TGCTGTGTGT 000720 000721 GTGGAGAGCA TTAAGAAAGG TCATATATTT CAAAAAAGAA TATTGTTTAC AAGGAGTGTT AATAGGTTTC AGGGGAAATG 000800 000801 TTAATTTTTT TTCCTGGATG AAATAGCTAC TGCAAGTTTT TAATGGTTAA TCATTCATTC TTGAATTTTT ATATTAAGCA 000880 000881 TTTCATATTA CTTTATTGAC TTAACTTTTA TGCTCTTCTT CATTTTGACA GTAAAGAATG ACCAGGCAAC ACTCTTTGAA 000960 000961 AATTGGAGGC CATTTGCAGC TGCTCTCTGT TGAGGAAAGT GAATAATAGG GTGCCCTCAA GGAATTGCAA AGGTATCACT 001040 001041 CAACAGAAAC TTTCGTGTCT GAAGAAAACT AGATCATTTT ATCATGGTAG GCATGCTGAT ATGTTTGCTT TAATAAAATG 001120 001121 CCATATTTCT GCCTTTAATC TCTTGTCAAC CCGCTATTAA AAAGCCCCAA AGTGCATGTG TGCAGCGCAT GTAAACACTT 001200 001201 GTGGTTTTGA GGTTACCACA GAACATACTA ATAAAGCATG TAATTTGTGT TTTGTGCACA GACTGTAATA ATTTATTGAG 001280 001281 TGGTACAGAG AAGCTAGAAA AGGATTTTCT CTAACTTTTG CCAGCAAGTC AATTTATTTT TAGTGCTCTA TGCAGAAGTA 001360 001361 CATGTATACA CATGTTCTTA TGATTACATC ATGTTTAAAA AGCATTAGGG AGCCTGCATA ACAAAATGGG ACAAAACATA 001440 001441 AATTCATTTT GCACATACGG AAGACATTCT ATCAAGCATG CTAATGTTCC TCCTATAAGC TGATCAGCTG GGAGGTGTGG 001520 001521 CATATATTCT TCCACAAAGG gtgtgtgttt gtgtgtgtgt gtgtgtgcat gtttgtgtgc gtgttGAGCA CTGACAATAC 001600 001601 ATTAGCAGAG TATAGATCAA GTAAGTTCAA GTAAATTAAG ACGAATAATA ATAGCAAGAA CTTTTATAAA CTTTACCAAC 001680 001681 TTTATCCCCA GTCCCCCTGG GGGAGGAGGG CAGAGAACAA TGTTGTTCCT TCTTTTATAT GGAATAACAA AACGTATAAT 001760 001761 GGTTGGGTCA CTTCTAGAGG GTCCTAGAAG AGCTCATTGC CAGACTACAG CTTCCACCAT GATTGTTTGG GTAGCCAATT 001840 001841 TATCTGTTTA TGTAAGATCC TTACAGGTAA GAACCATCAG GTTGTATACC ACTTAGCTTT TTGCTTTCAC TTCTTCCCTT 001920 001921 GTGAGGTTCC TTGCACACAA CAAATCATCC ACACAGATGC ATAATTTGAA AGGAAAGGTC TTGAGCTTAT GGAAGAAATA 002000 002001 CATACCAGTT TCTGGAAAAT TCTGTGAAAT TCTGTAGTTG GAAAATAATT CTGTGAAATT CTATGCTTTA TTTACTCAAA 002080 002081 CAAAAAACAC ATTCAGTTTA GAAATAACGT CTGTGCCCAG AAGAAATAGG TGTTAGATAC TCAAAACGTG TTTATTCCAA 002160 002161 AAAGATGCAA GATTTCTCTC CTGGAAAGCA ATTCACCACT CTCTATGCTT CTTTTTCTTT CTGAGAAGTC TTATACACAT 002240 002241 AACAGTTTTC AATGCACAGA TGGATCTTCT GTGGTTCACA ACCTTTTACA TTTGAGGGCT AATTAAAATG AATCCTTTGT 002320 002321 GCCACCTCTA AGATACAACT CACTCCTTCA TGTTGTTCAT TGACTAAGAT CTAATAAACC AGTTCCAATT CATAACTAGG 002400 002401 GATTATTGAA CTTCTTGTGG CCATTGGCTA TCATAGAGGC ATTGTGAAAA TCTCTAAGGA GACAAGTGCA CAGCAGCCTG 002480 002481 GCCCGGAGGG TCCTCTTATT TGAAGTAGAA CTCAAGTTGC ACCCAATTAT GTAAGGCTGA TCCAACCCAG AAAAGAGTTT 002560 002561 TCTGCAAGAG ATTAAGCCAA TTCTCCAGAA CTCTAAGGAG GAAATCAAGA TCCTTGTGGC TGTTTGATCA CTTCTGTGAT 002640 002641 TTGAATGTCT CCACGGTTTA |
Predicted Small Protein
Name | NONHSAT107644_smProtein_320:478 |
Length | 53 |
Molecular weight | 5937.862 |
Aromaticity | 0.153846153846 |
Instability index | 45.8826923077 |
Isoelectric point | 9.18328857422 |
Runs | 9 |
Runs residual | 0.0227075184702 |
Runs probability | 0.0388722055389 |
Amino acid sequence | MPKELFSLATSWYGGICYRIGPEYSCFFSDLTLKRSPRLNSTLLFQIASSKI |
Secondary structure | LLHHHHHHHHHHLLLEEEELLLLEEEEELLLLLLLLLLLLLHHHHHHHHLLL |
PRMN | - |
PiMo | - |