NONHSAT107577
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107577 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
933 nt |
Genomic location |
chr6+:6846254..6863947 |
Exon number |
2 |
Exons |
6846254..6846980,6863742..6863947 |
Genome context |
|
Sequence |
000001 AATGCATAAT GTCATGTATC TGCCATTATA GTACCATCCA GACTAATGTC ACCACCCTAA AAACCCCTGT GCGTCATCTC 000080
000081 TTTGTCCCTC CCAACTAACC CCTGCCAACC ACTCATCTTT TTACTGTCTC TGTGGTTTCG TCTTCTCTGG ATTGTTGTAT 000160 000161 AGTTGGAATC ATTCAGTATG TAGGCTTTTC AGATTTGTTT CTTTTACTTA GTAATATGCA TTTAAGGTTC TTCCATGTCT 000240 000241 TATTGTATCT GGTTTGTTTT TTAATTGACT CCAGGAAAGA AAAAATAAGC AGCCCAAATC TGTCACTTCA CCTAATTTTG 000320 000321 TTTCCCAACC CAAGCCAAGC CATTTCCTAC ACATCTGGAT TCAGATATCA TACGAGAAAA CACGTTCCTC GACACCCATA 000400 000401 TAAAACTGCA GTCCCCGGCC CTCATTCTTT CCTGGCTTTA TTTTTAGCAC TTTCTCATAC ACCTTTACTT TTATTTATTC 000480 000481 ATATTGTTTA ATGTCTGTCT CCATGAGCAC AGGGGTTATT GCTATTTTAT TTTTTGTTGT TTTTCCAGCT CTTGAAATAG 000560 000561 TGTCTGCCAT GTAGGGCCCT TGGTAAACAT CGAATGAATA CATCAAATTG ACACCCCCCA AAAATATTTA TGTGCACTCG 000640 000641 TGTGCTTGAC TCCATGGCTG GCATGCCCCT TGGCTTGAGA GGAAATCAAG AAATTAGGAT GGGAAGATGG AGTGAGGAGG 000720 000721 TGTAAGGGGA CACAAATCCA AGGTGTCCTC GTGGCAGCCA TAACTTACAG TTCCTCACTA TCACCAGGAC TTCTAACCCC 000800 000801 ATAGAGAGCT CATAATTGTG AGAACCAGGA ACACAGAATC TCCCAGTGAG TCACCAGGAG GGATGGTAAG GCATTCCTGT 000880 000881 TTCTACTCCT TCAGCCCTGG ATCTGTGTTT CAGGGTCCCG GGTTTTGCCC ATC |
Predicted Small Protein
Name | NONHSAT107577_smProtein_215:490 |
Length | 92 |
Molecular weight | 10559.4139 |
Aromaticity | 0.131868131868 |
Instability index | 45.089010989 |
Isoelectric point | 10.2166137695 |
Runs | 14 |
Runs residual | 0.0203754578755 |
Runs probability | 0.0405026875616 |
Amino acid sequence | MHLRFFHVLLYLVCFLIDSRKEKISSPNLSLHLILFPNPSQAISYTSGFRYHTRKHVPRH PYKTAVPGPHSFLALFLALSHTPLLLFIHIV |
Secondary structure | LLLHHHHHHHHHHHEEELLLLLLLLLLLLLEEEEEELLLLLLEEELLLLEEELLLLLLLL LLLLLLLLLHHHHHHHHHHLLLLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiTTTTTTTTTTTTTTTTTToo |