NONHSAT107438
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT107438 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3156 nt |
Genomic location |
chr6-:4491674..4499416 |
Exon number |
17 |
Exons |
4491674..4492333,4492447..4492561,4493033..4493323,4493430..4493541,4493621..4493716,4493812..4493933,4494051..4494083,4494705..4494779,4494994..4495062,4495144..4495228,4495336..4495439,4495525..4495776,4496045..4496342,4496431..4496481,4496615..4496793,4497049..4497132,4498887..4499416 |
Genome context |
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Sequence |
000001 AACATCCTTG GCATCAAGCC TGGCAGGTGT GGTGGTCACT ACCACTGCCA TTCTGAAATA TGGTGAGACT GAAGTATTGC 000080
000081 CACTGACTTG AAAACATTTC CAAGTGAAGC ATTTAGAAAT GTTTTATTTT GTTAAAAACA GCTTTATTGA AATATAATTT 000160 000161 ACACACTATT CAATTCCCTT AAAGTATACA ATTCAATAAT TTTTGTATAA TCACAGCATT ATACAACTGT CACCACAATC 000240 000241 AATTTCAGAC AGTTTTTGGA AGCCCCCAAA GAAACCCTAT GCCCTTCAGT CATCACTCTT CAGTCCCCCA TCTCATCCCA 000320 000321 AGCCCTTGGC AACCACTCAT CTACTTTCTG TCTCTATTGA TTTGTTTTCT GCATGTTTCA TATGAACAGA ATTATTTAAT 000400 000401 ATGTGGTTCC TTGTGACTAG CTTCTGTTTT GTTTTGTTTC TTTGTTTTTA ACCACTTTAT TGAGATATGA TTGACATACA 000480 000481 AAAGCGGTAG AAATGTAGTG TATACAACCC GATGTGTTTG AAGCTCTGTG CCCCACCCCA GGCCTTTTAT TCGTGTTATT 000560 000561 TGTGTGCAGG TTGTGTATTG TGGCCAGCTG CCTTCCTGGC TGAACTGTGA GCTCAGTTTC CTTTCTCCAG TGTGATTGCT 000640 000641 TGTACAGGTT GGGACAAGTT GGTAAAACTG GAAATAACAA CTTTGCTCGC AAATGCATTG GCTAGCCTCA CTGAGGCAAT 000720 000721 TTTGATGGAA AGAGAAAGGG CAAAGCAGGT AATACCTGTT ATGCATTGTA AAATAAAACT GCTGTCAGGC TAATACAGAG 000800 000801 ACAAGAGCTT TCTTAAGTTC TGTAGAAGTA CTAGGAGTAG ATTAGGAGGC CAAGGTGGGC AGATCATGAG GTCAGGAGTT 000880 000881 CGAGACCAGC TTGACCAACA TGGTGAAACT TCGTCTCTAC TAAAAATACA AAAATTAGCC AGGCACAGTG GCACGCACCT 000960 000961 GTATTCCCAG CTACTCCAGA GGCTGAGGCA GGATAATCGC TTGAACCCGG GAGGTGGAGG TTGCAGTGAG CCAAGATTGC 001040 001041 AGCACTGCAC TCCAGCCTGG GCAACAGAGT GAGACTCTGC ACCCGGTGTG AGCCACTGCA CCCAGCCCGT ATCTTGCAAT 001120 001121 TTTCACTTAA CCATTCACAG AAAGTGCCTT TCCCCACTGT TCTTCAAGAG GCCTGTACCA GTTTACACTG GCAGCTGCAG 001200 001201 AATACGAACG TTCCAGGGTT CACAGCTGAG TTTTTGTTTA CATGGTAATA TAGAAATGGA CTGCCTGGCA TGATCTTCTC 001280 001281 ATGGCCTATT GCCCCTAGGA CTGCTCTGTG GACAGATAGG AGGAGGCAGG TCTACTTCCT GGGTCACCAA ATGCTCTGGA 001360 001361 ATCATAACCT CACCTTCTCT CCTCTAAGAC AGATAGGCTG GAGTGCAGTG GTGTGATCTC AGCTCACTGC AACCTCTGCC 001440 001441 TTCTGGGTTC AAGCGATCCT CCAGCCTCAG CCTTCCAAGT AGCTGGATTA CAAGCACAGA TGGGTTTACA GGCGTGAGCC 001520 001521 ACCGCGCCGG GCCCAGAGTT AGGGCATTCT GAAGCCCAAA ACCAGAGAAG GCTGAGGAAA TTAGCCAGGG AGTGAGAAAG 001600 001601 TCAAGCTGCT GCTTTGCATT AGATCTCAGC CTTCCCAGGA GCACTTTATT TGGATTTCGC TCTTCTTTAT TGACAGAACT 001680 001681 TTCCTTTCAT GTACGGTTGC AGTGTACCTG ATGAATCCGC TCATTTCTAT GCACACAAGG GTTTCACCTT TATAGTATAG 001760 001761 CATATTTCAT AGAAAATTAA ACATTGAACC TGAAAAATTG GATTTGGCAT TTGATATTTT AAAACTCTGA CATGGCCTTC 001840 001841 CATATTTTTT TGTTGTTTTA TTTTTAGGAA AGTCTAGAAA AGAAATGACA TTTGAAAACC ATCTACCCTG TTCACGTAGT 001920 001921 TTTGTTCCTG GATAAATCGT CTTCTGCTTT ATGGAAGTGA CTTATAAAAG AGACTCAGCA ACCAGAGTGT TTTCCTTTGA 002000 002001 AAGCCAGAGA GGAAAGTACT GCTGAGAGGT TTGTATCTGG TGCATTTGTC AGCAACAGGT AATTTCCCAG AGGTGGGATG 002080 002081 AGCAAAACCA TTGTATATTT TTAAATAGCT TAAAGAGTAT AATTGTATTG TTTGTAACTC AAAGGATAAA TACTTGAGAG 002160 002161 GATGGATACC CCATTCCCCA TGATGTGCTT ATTTCACATT GCATGCCTGT ATCAAAACAT CTCATGTACC CCATACTCAT 002240 002241 GTACCTACTA TGTACCCAGA AAAAATTTTA AAATAATTTT AAAAATTTAA AAAAAGAGGC CGGGCACAGT GGCTCACGCC 002320 002321 TGTAATCCTA GCACTTTGGG AGGCCAAGGT GGGTGGATCA CAAGGTCAGG AGATCGAGAC CCACTCCAGC CTGGCAACAG 002400 002401 AGTGAGACTC CTTCTCAAAA AAAAAAAAAA AAAAAAAGAA TGAATGCTTT AATAAAAGAA AATAACCTAA GGACAATGGA 002480 002481 TGTCAGTGCC ATGCCCGACT TCCTCCAGCT GACATGCTGA CTCTGACTCA GCTCTGCCCT TCTCTTCATG TTCTTCACTG 002560 002561 GCCATAAGTC CGAAGACATC CGGATGCTGT GGGATCCTGA ATAGCTCTTG TGTCTTAGTC CTGTCCTTCC ACCACATCTC 002640 002641 AGAAGCCATG CCAATGACAC AGCTGTGTCT GGAGGGGACG CTGTGCCTGC TGCCACCACT TGCCCTCAGC CCAGGGGTGG 002720 002721 AATCAATACT GAGGATGACA GAGGGACAGA TGGAAAGTCC TCCGTGACAC TCACTATCAA TCACATTGCA TCTGGAGCTC 002800 002801 GCCTTGTCTC TGGATTCCTG GTTACAGGGA CAATAACTGT TCTTCTGGTT AAACCAGTTG AATCAGATGT TTATAAATGG 002880 002881 CAGTCAAAAG TATGGACATG TCTAGGAAGG GCTGAAACTC TTGCAGTAAC CCAGCCAATC ATCTGTGATG TCATCTTGTC 002960 002961 TGGCAGCCTG TTAAGCCATA ATCCATCTCT TATAGCTTGA AAAGCAACAA CTGCTGGTGG CTACCAGATT TAACAAGAAA 003040 003041 GCATAGAGGA TGTCCAGTGA AATCTGAATT TCAGATAAAC AATAAATAAT TTTTACAGCA TTACCATGTC CCACATATTG 003120 003121 CATGAGACAC ACTGATATGA AAATACCACT GCTTGT |
Predicted Small Protein
Name | NONHSAT107438_smProtein_278:415 |
Length | 46 |
Molecular weight | 5229.1018 |
Aromaticity | 0.155555555556 |
Instability index | 52.0311111111 |
Isoelectric point | 6.35955810547 |
Runs | 6 |
Runs residual | 0.0289141414141 |
Runs probability | 0.0286168521463 |
Amino acid sequence | MPFSHHSSVPHLIPSPWQPLIYFLSLLICFLHVSYEQNYLICGSL |
Secondary structure | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHEELLLLLEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | oooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii |