NONHSAT107097

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT107097

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

1056 nt

Genomic location

chr6-:3381593..3383155

Exon number

3

Exons

3381593..3382449,3382556..3382626,3383028..3383155

Genome context

Sequence
000001 TCTGTAAACA ATGAGTGAGT TTACCATTCC ATCATTCCAT CAGTAATCAG CAGCAATGCC CTTCTTTGGC AAGAGCTCTT 000080
000081 TCCTCCCTAC ACCTTCCCTT GCTATAATAC TAGACTAGGA CTCAACAAGC GTAAGTGCAT CTTAAGGGTC AGTATGTTAT 000160
000161 GCATTGTAAA CTACGTTACA AAGCCACAAC TAAAAATACG CCTGGCTGGC TGTGCATACT GAGGACTAAG AGTTGGTGGC 000240
000241 TCAACCCTGT CACTCTGTCA AGCATGCAGA ATAGATTCTC ATGGAGAAAA TATTGACTTA TCTTTGTTGA ACTGAGAGAG 000320
000321 CAGAGCAGCA TCCTTGAAGA GCTCTAAGTA CAAGTGGAGG ATCCACCTCC ACTGAGTTAT TCCCCTTATG TTAAAGTGGA 000400
000401 CCCCCTTGTC ATCGTGACAT CAGGGTAAGT GAGGCGGAAC ATTGCAGGGA AAGAGCATGG GCCTGGGGCA GACAGATGGG 000480
000481 AATCTGGGTC ACTCATAGTC TTCTCATTCT TTAAGCAGGG TGCATGCCTG TCTCACAAAA TCATTGTGAG GGGTGTGTCT 000560
000561 TGCTCATGGT GGCAGCAAAT GAGTCTGAAA GGAGCGTGGC TGAGGGAGGC CAAGAGGATG CTGATAAGAA AAGGAACTAG 000640
000641 GGACTTTACT GTGCACTGCC AGGCATTGTT CTAGCTCTTT TCTCCTGATT CCATTCTCAC CATAAGCCTG TAAGAAATAA 000720
000721 ATTCCACTAC TGTCCCCCTC GCACAGATGG TAAATGGAGC AGAGAGAAGG CAGGGCGCTG GGCCAGGCTT GCTTGGCTGG 000800
000801 AAGGCTGTAG AGCTGGGATT GGGAGCACAG CGTGTCTGGC TGGAGAGTCC CCACTCTTCT CTGCGACATG GTTTATCACA 000880
000881 GTGGCTGTGC TGATATTTTA AGCCTGGCTG TTGTTAATTT TTATTGGGGA CTGGTCCTGA AACGCCTCAC CACTGAGGCT 000960
000961 ACTCAGTCAG CCCCATTCTG CTGTCCTGTA GTTAGTTGAT CCTGCCCAAC CTATGGCAGA ATAGACAAAA GGTGTCCTAG 001040
001041 GGAAAGGTCC CCAAAA
[back to top]

Predicted Small Protein

Name NONHSAT107097_smProtein_746:892
Length 49
Molecular weight 5209.9252
Aromaticity 0.0625
Instability index 52.06875
Isoelectric point 9.48992919922
Runs 7
Runs residual 0.0197368421053
Runs probability 0.0487924899689
Amino acid sequence MVNGAERRQGAGPGLLGWKAVELGLGAQRVWLESPHSSLRHGLSQWLC
Secondary structure LLLLLLLLLLLLLLLLHHHHHHHLLLLEEEEEELLLLHHHLLLLLLLL
PRMN -
PiMo -