NONHSAT106525

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT106525

Source

NONCODE4.0

Same with

,

Classification

overlapping(AS),sense

Length

6026 nt

Genomic location

chr6-:1585165..1624125

Exon number

4

Exons

1585165..1590367,1592239..1592732,1593901..1594006,1623903..1624125

Genome context

Sequence
000001 AATTATGTTG TTACACAACA AATTGTGGGG CCTTCAAATT GTTTTTCTCT TTTCATATTA AAAATGGTCT TTCTGTGAAC 000080
000081 TAGCATTCAC AGGGTCAGTG TGGATGTTTT CTCCCAAGTT ATGAACACGG CTATAGGGGT CCCCAAACAA CCCCACAATC 000160
000161 CAGGCCTTGG AATGAGATCG CTGTGGTCAG GCCTTGCCCT GTTTTGAGAA AGCCCTTGGT GGGCCAGTGA GGGCAGAAAG 000240
000241 AACACCAGTC AAGCAAGGGA GCACTTCCTT GTCCTACAAC CTCATCCCAG AGTCTATTTT TGTTAAAACT CCAGAAGAAG 000320
000321 GAAGGAAACG GGTAATGGCC CCCAGCTCCA TCCATGTTGC TGCAGAGGAC ATGATTTCAT TCTTTTCTAT GGCTGCATGG 000400
000401 GAAGAAGCTT GTATTTTATT AAAGATTAAG CAAGATCCAT GTTGCTGAGG ATGTTTTGTC TGTGTGTGTG TGTGTGTGTG 000480
000481 TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG GAGAGGGGTA GGTAGAGTAT ACCGGAAGGA AGTAGGACTG TAGATGTTGA 000560
000561 GCTTTTTGTC CTCCAGAATT GAATGTGGGC CACGCTGGTG TTTGTGGAGT TCCATGATGG CTGAGCTGTG ATGACTGATG 000640
000641 TTGCCAGGAG CTTTGTCTGT GTGGACTCGA CCCTCTGCCA TGTTGCCCAG TTCTCCTTGA AGTCAGTGGA AGCTGCATGG 000720
000721 CCTGGCCTGG CGCAGCTGCA GGTGATGCAG CCACTGTTAG GTGAGCCTGG CCTCATTCAG AAATGATCTC CAAAATTCTT 000800
000801 TAGAGAAAAG GGGGAGACTG CTGATTAGGG AAAAATATTT CACGTAAAGG ATCTCTTTCA TGTGGCCTTT TCACATTTTC 000880
000881 ATGAAAAGGG AGGTTTATCA ACTTTTTCCT AAGTGAGATT ATGACGCTGC CCCCGTAGGG CACCATTCCC TAAGCTGAGT 000960
000961 GCCGTAGAGA ACCAGCAACA CGGGTTATGC AATTGTATAA ACTTGGGAAT TATGAGCGAC GTTGAATTGT TTCCTGCTGC 001040
001041 AGACCTTTCC AGAGCCTTCA GCAGCTAATG TACCTTTTGA AATCACAAGG TATGGAAGGC GTCTCACAGA GTTGACCATG 001120
001121 GGATGATCTC CTGGATTTGT GTTCTCTAGG CTTATTTTGG GAAACACCCC GATAAGGACT GGATGGATGG TGCACAGAAT 001200
001201 ACACAGGGAG TGTCCGAGGC TGAGGTGCTG CCCCAGTGCT TGGTTTCTGG TGTTGTTTCC CTCATGGATA GAGGGCAGGC 001280
001281 AGGGTGGCGG CCACAATGAA ATGAAAGATT CCCTCCCGTT GTCTTGCGTA AGTGAAGTGA TGGTTGCTCT CTTTTCTCTT 001360
001361 TAAGTAGGTA TTAGGGGATC ATTGCCTGGT TTTCAGGCAC TGAAATGGAC ACGCTCCTCT CTCATGCCTG ATTGTGTAAG 001440
001441 AAGCATTTAT TAACCATGAT GAGGAGCAGA CGCTGCCTGG TGTGGGCAGT GCACAGGTGA ATGAGACCTG GAGTTGCCAA 001520
001521 GAGAAGAAAG AAACTCGTAG TGACTTCCCT TTGATCTTGC TTTTCTGGGT GCGTTGATAA TCATCTCCAC CTCAGTTACC 001600
001601 AAACACAAAG ATTTCAGGAG TGCCTTGGCC GAAGTTCACT GCCGGCCAAT CCCAGTCTTG TAATGACTAT TGTTGAAATG 001680
001681 CTGTGGCTTT TCCTTCCCTG TTCATATGTC TTGTGTGGAC AGTGTCACAT GCCCAGCCAC CAGATCATAA TAGTATGTTT 001760
001761 AAAAGATTGC TCTAAAATGG GCTTTTGGAA GGGGAGTCAA TCAATCAACC AATCAATCAA GGGAGTCATG AATTCTCAAT 001840
001841 GTGCCTCTTT TACTTTGCGC AATTTGAGAC TTCATATCAG TCATCTCTGT CCATGAGAAA ACATGATGGC ATTGTAGTTA 001920
001921 AAGGCCTCTT ATGTGCCAGT CACTGTGCTG AGTACTAGGA GACAGCCCGT GAGATGTAAT TTCTGTCCCA ATTGAAAGAA 002000
002001 GTAAACAGTA ACAATTACAG CTGCCGTTTA TCAAATACCC ACTCTGTACC AAACACTGCT TGAAGACTGA AGGTTTGCTC 002080
002081 TGAACAATCA CTCTCATATT GCTGGCAATG TTTCATACAA AGATTTTTTG AATGGAATTG ACTATAATTG TTGGGGAATA 002160
002161 AATGAAATTG CAAAGCACCT TGTACAGCAT TGGCCTTGTG GTAAGAGTGA AGGAAAATAG CCTTCACTGC CCATTGTAAT 002240
002241 TATAATGCCG GGCAACATCT GTTTCTTATT CATCTTTGTC TTCTCAGTAC CTGGCCCAGA ACACACACTT GATAAATGTT 002320
002321 TGTTAACAAT GAATGATGGG CTGGGCGTGG TGGCTCACGC CTATAATCCC AGCACTTTGG GAGGCCCAGG CAGGCAGATC 002400
002401 ACTTGAGATC AGGGGTTCCA GACCAGATTG GCCAACATGG TGAAACACCG TCTGTACTAA AAATACAAAA GTTAACCAGG 002480
002481 TGTTGTGGTG TACGCCTGTA ATCCTGGCTA CTCAGGAGGC TGAGGCAGGA GAATTGCTTG AACCCAGGAG GCAGAGGTCG 002560
002561 CAGTGAGCCG GGATTGTGCC ACTGCATTGC AGCCTAGGCA ACAGAGCAAG ACCTCGTTTC AAAAAACAAA AAAACCAACC 002640
002641 AACAAACAAA AATCGATGAT GATGACTCAA GTAAGAAATA ACAATTAACT ACTCGGCAAA ATAGAGTAGA TAGACAGTCA 002720
002721 CTTTCATACT TTTAACTTTT AGACTTGTTT ATTTTGCTCA TTTGGAGAAC TAATGACGTG TGACTGACGT GGAGACTTGA 002800
002801 GTCGAGTCAT CAGATAAATC AAGGCAGTGC CGGGTATTAG CACGCATTAT CTTGATAATT CAGGCACAGA TAGTTTGGGG 002880
002881 CCACATATTC TTTGGAAAAT GTCCTTACTT TCACGTGAAT TTCCACATTG TGGATTGGCG GAAGTTCGGG AACATTACAA 002960
002961 ACGCTTACCA TGAACTCAGG ACAACTTGCT CTTAGATGTG GGTCTATATT TTGCAGGAAG GGTTACCATG GGATTGATTC 003040
003041 TGAGCAGGCA AGGTTCTGCA TGGAGATGGC TTTAGGATAA GTATATGGGT TTTCCTGTGA TGTCGACAGC ACATGATATT 003120
003121 TCCATAAAGG TCACTTAACA TAAGCGCACA AAAGCCTTCA TGGGTTGTAA CGCTGCAGCT GCCAAGCCAG GTGAGCCAAG 003200
003201 TCTCACTGCC TGGGGAATTG TGCCGGAGTC AAGACTAGAA CCGGCGCTGC CTGGTGTTAA CAGGAGCAAA CAGGTTCGTG 003280
003281 GCAGTGATCT ATGGAGTCTC ATTTCCAGCT CCTTTATTCA CTTGTTCATA ACTTTCTGCC AAATTCTTTG AGGCTGAAAG 003360
003361 CTTTCTTGTC TGGTGCTGGG CCATGACTGC CCAAAGGTAA ATTTTTCTGG AGAGTTTCTG CCAGAGCTAT TAAGCCTTTC 003440
003441 TTGAATCAAT GAAAAAAGAA ATTCTTCATT TGAATTTGTT GGCGTCGGTT CTCTGGTAAT TCAGCACTTA GCCCAGTCAC 003520
003521 CCAGAAGATC TCTCTCTCTC ACACATACAC ACACACACCA ATACTTGAAT ACACACATGC ACACCCAACC CACACACATA 003600
003601 AGCAGACACA CACCCAATAC ACTTGCACAC AACTTACACA CATGCACACT CACATACACC CATACTCTCA CACACCACAT 003680
003681 ACTCATATGC ACACACACCC AACACACACC CTCATGCACA CTCTCATACA CCCAGTACAT TCACTATACC ACACACACAG 003760
003761 ACGCACACAC CACACATGAA CACACACACA CACATGCAGG GCCTACACTC TTGGTCTAGA CCATGCAAAC CTGAACCACA 003840
003841 GGGTCATTTT TCCCTTGGGG GCACTGCAGG CTCTCGCACC TGGTCCTGTG GGAAAGGGAG GCTGGAGGAG CAGACAGACT 003920
003921 CATCAGATCA TGCCCTCCAT TCTTTCTCAG CAACAAACAA ATGCACTCAT TTGCCTGCTG CTTCAAAAGC AGGAGTGTGG 004000
004001 CCTGGGTGCG GTGGCTCACA CCTGCAATCC CAGCACTTTG CAGGGCCGAG GCAAGATCGT TTGAGGACAG GTGTTAGAGA 004080
004081 CCAGCCTGAG CAACAAAGGG AGACCCGTCT CTACACAAAA TTAGAAAAAA AATTAGCCAG GTGTGATGGT GCACACCTGT 004160
004161 AGTCCCAGCT ACTTGGGAGG CTGAGGTGGG AGGATGGCTT GAGCTTGGGA ATTGGAGGCT GCAGTGAGCT GAGATCACAC 004240
004241 CACTTCACTC CAGCCTGGAC CACACAGTGA GACCCTGTCT CTAAAAAAAA AAAAGAAAAA AAAAAAAAAA GCAGGAGCGT 004320
004321 GAACTTGAAT GGGAACAGCA GTGAACGCTG AGTCCTGGGC ACATTCACTC AATGCCTGTT ACCACATAAG AGGGGGAGAG 004400
004401 GGGCAACCCC CCGGACCTAC ATTTTTATAT TGGTAGGAAA TAGTAACCCT TGAAAACAAG AGGAAGGAGG AAGGCACTGT 004480
004481 GGCTACACCC CGGCTATGGA GGTGAGCACC AGCCTGCCTC TGTGTCGTCC TCCGTTTCCT CCATGCCTTC CATACTCAGT 004560
004561 TGAGTGGATG CCACTTGTCA AGAGCTATAG TCAGTAGCAA TTACTAGCTC CAGCTGTCTG GAGGGAAAAG TGCTGGCTTG 004640
004641 ATGAATGAAG TGACTTCTAG TCCGTCAGAG GTATGGTTCT GGGAGAGCAA CAATCATAAC TAATAGTTTT TTACTTAACA 004720
004721 GACCTTTTTA CAACCCGAAA CTCTCTTCAC AAGGGCTCTG AAAAATAACT GGACACTAAC ATGACCTGAT TTGGGAAAAA 004800
004801 ACTGAATTCT CTAATTTTCC ATATTGAAAA ATTATATTGC CTTGTTCTTT TATTCTGCAA AAGGAAAACA GAAAAAGGCA 004880
004881 AAAGTCACAG AATGGAAAAG GGCAAAGAAT TTAAGAGGAT GAATTGAAGA AGAAAATAAA ATGCTGAGGT TGGCTTGGCT 004960
004961 TGTTCCAGGG AGAACCTGGC TGGAACAACC GGGTGTTCAT CGGGAATTCA GAGGCTGTGC CGACCCTCCA GGGAGCCAGT 005040
005041 GCCCGACCTG TCCTCCGGGT GGGGACTGAG GATGCAGAGA ATGGCTCAAT CGGCTGCACG AGAGGCCCTG CCCTGTGGGC 005120
005121 GCTGAGCAGT AGCCATGGTC CCCTGCCGGG TCGGCAGAGT TACCTTTGCT GCTGCATCCA TGAAAGACCC TTTCTCCTTG 005200
005201 AGCTAGTCGG GGAACCCACG GTGGCCAAGG AAATGCACCA CCTCCTTCTA CAGACACTTT CCTCCTGGCT GCAGGGGCTT 005280
005281 TCTGGTGAGT GTTTTAGTCT CTTCCCAACT GTTTCTTTTA ACCAGATTTC ACCTGCATGA AAGCCCCCAG TAGGGTGTCA 005360
005361 GAATGTGGGG AGAGTGGGGG GATACTTGGC GGGATTGCCC GAGCCTCAGT CCCTAGCCTG TCACCTCGCT GGGGAGTGTG 005440
005441 GCAGTTCAGG GCCATCATCT TCACGGCAGC TACGTTCTGC AGAGTATTCC ATGCTAAAGC CAGGAGCTTC TGGGGGAGGG 005520
005521 TGGTGGGTTT CACATGGATC CTAGCATTTC CTGCCCGTGT TACAGGCATG TGAAACACTC GGTTCTTCTC TCTTATGAAA 005600
005601 AGAACTAGAA CAAATGGAGT CCGTACATGT GGCCTTCGGG CACTGGGGTG GCTCAGAGGG GAGGAGAGGT GCTTAGAGTT 005680
005681 GGTTTTTTGG ACAAGACCCA GTGGAGCAAT TCTAATTCCC TCTCTGTTGA ATGACAGCCA ACACTCTTGT GCTGTTGATC 005760
005761 TTCTCACCTC CGTATTTGTT TATGAATTAT CTGGAAAGGT GATTGTATGA GCTTACCGAG ACAGAGTTCC AGGGGCCCCT 005840
005841 GGGGGAAGCC GGGCAATGTC TCCACAAGCA AAGCCATGTG GGAGGGCCAG TGGGACACGC AGAGGAAAGC CCCTGTTCCT 005920
005921 TGCCACCGAA GAGAGGGTTT TCATGCTCTG AATTGGTACA GTGAGCTCCC TATAAGCACT AAACTCACCC GCTGAAACAT 006000
006001 TGGCTCTTTA TTTTGCGCAA TTTAAG
[back to top]

Predicted Small Protein

Name NONHSAT106525_smProtein_5336:5572
Length 79
Molecular weight 8516.912
Aromaticity 0.141025641026
Instability index 53.0948717949
Isoelectric point 11.786315918
Runs 11
Runs residual 0.0073483427142
Runs probability 0.0495094024505
Amino acid sequence MKAPSRVSECGESGGILGGIARASVPSLSPRWGVWQFRAIIFTAATFCRVFHAKARSFWG
RVVGFTWILAFPARVTGM
Secondary structure LLLLLLLLLLLLLLLEEEEEEEEELLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLL
LEELEEEEEEELEEELLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLHH
HHHHHHHHHHHHHHHHLL
PiMo oooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiTT
TTTTTTTTTTTTTTTToo