NONHSAT105972
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT105972 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2785 nt |
Genomic location |
chr6-:168171..172220 |
Exon number |
2 |
Exons |
168171..170561,171827..172220 |
Genome context |
|
Sequence |
000001 CTTTTAACAG CACCCAAGTC ACCTCTTGAA TGCTTTGCTG CTTAGAAATT TCTTCCACTA AATACCCTAA GTCATCTCCC 000080
000081 TCAAGTTCAA AGTTCTACAT ATCTCTAGGG CAGGGGCGAA ATGCCACCAC TCTCTTTGCT AAAACATAGC AAGAATCACT 000160 000161 TTTACAGTAG TTCCCAATGA GTTCCTCATC TCTATCTGAG ACCATCTCAG CCTGAATTTT ATTGTCCATA TCATTATCAG 000240 000241 CAGTTTGGTC AAAGGCATTC AACAAGTCCC TAGGAAGTTC CAAACTTTCC CACATTTTTC TGTCTTCTTC TGAGCCCTCC 000320 000321 AAACTGTCTC AACTGCTGCC TATTACCCAG TTCCACATTT TTGGGTATCT TTACGGCAGC ACACCACCCT ACTGGTTATT 000400 000401 CAACAGGAGT TATTATCTAT GAAAGAAGTA CAACAGAAAT GTAAAAAACT TGAGGAGGTT AACAAAATTT TGGAACAAGA 000480 000481 AGTAGTGAAT CTTAAGACAC ATGAAAAAAA TATGGTAGAA TTTGGTGACG TAGAAGAATG TAAATTGCAG TTGGAAGAAA 000560 000561 GAGCAGGACA GGAAATAGAA AAATTAGAAG AAATCAATTT ACAGGTTAGT TTTTTTAATC AGGTAGGTTT ATCTGTAATG 000640 000641 TGCTTTCATT TATTTCACTG CAAATTATAA TATAGACATA CAGTGTTTTG TCTGCCTCTC TTATAGGAAT TTGCTTTGTA 000720 000721 GAGTTTTAGA AAAAAAGGTG GCACCTGTTT CTTATTTTAA ATATTTAAAT TTCCATCATG ATTATAACTA AGTTGATCTT 000800 000801 TCAGAGTAGT GAGTTTCACT ATACAGTCAT TTGGTTATTA AAACCAGTTA GCATAAGACT ATTAGAAAAA GAAAACTCTG 000880 000881 ATTTAAAATT ATATGGTACT TTTGAATTGG TCTTACGCTA CATTGTTCAG TTTTTAACAT TTCCAATGGA TTCTATTATT 000960 000961 TTTAAATGAT TAGATTACAT GAACACTAAC AAGAATGATT TCAAATTTTT ATAATTCATA TTTAATTCTG AATTCTGTTA 001040 001041 TCAATTTAGA TGAAATTGCT AATAGATGTT TTAAACTTCA GCCCCTTTTT AAAACACATA TTTAAAATTG CTTTCTGAAT 001120 001121 CACTGACTCA AAATGAAAGG CAACAAATAG AGACTAATTA GGTTATAATT GTTTTAAAAG TATGATTTTT TATTTGTTTT 001200 001201 AGAAACAAGC AGAATATGAA AAACACAGCA GTTAAAAGAG AATAATATGG CTTTGATGAA TAAAAGAGAA CTCTGACTGA 001280 001281 AAGACGTGGA ATGTCAATTC TCCAAAATGA AAACCGCTTA TGAAGAGCTT ACTACGGAAT TAGAAGAATA TAAGGAAGTC 001360 001361 TTTGCAATAA CATTAAAAGC TAACAAATCC ATGTCAAAAA ATTTAAAGAA ATAAGTCAAA ACATACACTT GTAGAAAATC 001440 001441 AATCAAGTTC ATTAATTTGC CATGAAAGCA TAATTTTTAG TGAGACAACT TCATGAGATT AGTAGGAAGT GAAAGCTATC 001520 001521 CTGATAGTAT AATTTTTGAA AATAATGCTA GTAAATAAAC TTACATTTAA AATGTTAGTC AAGGACAGTT TCTGTCTCTT 001600 001601 CCCTCATTTT TTTTTTAACT TTTGTATGGC CTTTTCCCCT GAAAAATCTT ACGTAGTTAA CCTAGTCTAT TAGTCTTTTA 001680 001681 GCATTTTTGA AGCTTTATGG TCAATAAAGT GATCTTGCTG TAAAATTACT TTTCAGAATT CTTCTAAATG GAAATATTAA 001760 001761 TGAATTTAAT TTGTTTTTTA GTAGGTCACA ATCTAAACTC AAAGTGCCCA AACTACTACT ATTCTGGGCA CGTCCTGGCA 001840 001841 TTTAGTAACT TAACTTTCCT GATTGTGATT TTTAGTATTA TCACTAGAGG GCGCTTTGAG ACAAACTTTT CTGTATAGTT 001920 001921 TTTTCAGTCT ACAGGAAGAC ATGCTTGTGA AATAGGGAAT GATTATCCTA GGGATGAAAG AAAGTGTAAT TTACAAAGTT 002000 002001 GTTTAAAAAT AACACCTTGG TCAGCCTGAA GGGGTGTGTG GAAGACAGAA AGGGCAAGCC CCACCTCCAG TGCCTTGGTC 002080 002081 ACAATGCTAA GGGCTGATTG CCTTCAGAGA TGCTTTAGTT CTTTTTGATC ACCAATCCAA CCATCTAGTT CTCTCCTAGG 002160 002161 AGTTCTTGCT CTGAATTATT TCTCAGTGTG AAATGCTTAT TTTTTCCTAG ATAATGGGTG AAATGTACAA GGGTGGTGAA 002240 002241 AACAAATGTT TGAAAATATA TTTAGGAGTG ATTTCTAAAA TCCTGAAACT GGTTTCTAAA TACAAGTATT TCTAGCTTCT 002320 002321 GTTTTTGTTT GTTTTTGTTT TTGTTTTAGT TTTCTTAATT GTATATTATT TAAGGCATAC AACACGTTAC TATATGTTTA 002400 002401 TTCATAGTGA AGTTGTTCTT ATAGTCAAGC AAATTAACAT ATCATCTCAC ATAGTTACCT TTAAATACAA GTATTTCTTT 002480 002481 TTTTTTTTTT AATTTTCCCG AGATGGAGTC TTGCTTTGTT GCCCAGGCTG GCGTGCAGTG GCGCAATCTC AGCTCACTGC 002560 002561 AACCTCCGCC TCCCAGGTTC AAGCAATTCT TCTGCCTCAG CCTCCCAAGT AGCTAGGATT ACAGGCGCCC ACCACTGCAC 002640 002641 CTGGCTAATT TTTGTATTTT TAGTAGAGGC AGGTTCTCAC CATGTTGGCC AGGCTGGTCT CGAACTCCTG ACCCGGTGAT 002720 002721 CTGCCCGCCT CAGCCTCCCA AAGTGCTGGG ATTACAGATA TGAGCCACTG TGCCCAGCCT GAATA |
Predicted Small Protein
Name | NONHSAT105972_smProtein_1544:1672 |
Length | 43 |
Molecular weight | 5047.0507 |
Aromaticity | 0.238095238095 |
Instability index | 51.0285714286 |
Isoelectric point | 8.73883056641 |
Runs | 10 |
Runs residual | 0.0619349005425 |
Runs probability | 0.0403550609434 |
Amino acid sequence | MLVNKLTFKMLVKDSFCLFPHFFFNFCMAFSPEKSYVVNLVY |
Secondary structure | LLLLHHHHHEEELLLLLLLLHHHHLLEEEELLLLLEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooo |