NONHSAT104768

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT104768

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

1950 nt

Genomic location

chr5-:156992971..156996106

Exon number

2

Exons

156992971..156993754,156995045..156996106

Genome context

Sequence
000001 AGATTGCTTT TAACAATTAA GATCTTGGGT ATTGCAACCT ATTCATACCC CCTGAGGAAT GGACCTGCTA CTTTTTATAG 000080
000081 AGGCTTCTTT GTTCTCTCCA GATGTGGATG CCGGGCATCC TCAGGAAGGG CCTGAGAACA AAGCAGAGGA CCAGATCCTG 000160
000161 TCTTTGTTCC CAACCATTGT CTGCCCAGCA TATGGGTCAT TGTATTCTGT AGGAATAGTC AGCATAGTGC CTGGCACCGT 000240
000241 AACTATTTGT TCAATGAACA AATGAATGAA TGTTGAAGAG AGAGAGACTA GAGGCTGGAT TTCACTTGGG CCTCTCATTC 000320
000321 TCATTTATAT AATTAATTCA CTCATTAAAC ATTTTTTTCT TCTCTTTTTC TCATCACTGA CTTAAAGCTC ACATTCATTA 000400
000401 AACATTAACT GAATACTTAT ACTGTATACT AAATATTATA CTAGATCTTA GGGGGAATGC AAATATAGGA CAGATTTCCA 000480
000481 ATACCCTATG GAGCTAAAGA TCTATTTAAT CTAGACTGAA GGGGAAAGAA TTTTTAACCC ATCCCTAGGA GAGGTATAAA 000560
000561 TAGTGGGTCA GCTTACTGTA CTTCATAGGA GAGGAGAGCT GATGGTGCCT CTTCTTAATA CAGAGTGGAG TTTCATCAGA 000640
000641 AAAGCTCATC AGTAGAGCCG GACAGAAAAG CTTCATAGAT CCTTAAAATG CAGTTTCATT GTTTTGCTTG AAATGCCCCA 000720
000721 TAGAAAAAGG GAACATCCTT TTTTAAATAT CAGTGCCTGA GCACCTTCCA GAATAGAGAG AATTATTTTT GGATCACCCA 000800
000801 CATAAAAATA AAGATTACTA CTCCTGGCGG GGCATGGTGG CTCACGCCCT GTAATCCCAG CACCTTGAGA GGCCGAGATG 000880
000881 GGTGGATCAC CTGAGGTCAG GAGTTCGAGA CCAGCCTGGC CAACATGGAG AAACCCTGTC TACTGAAATT ACAAAGATTA 000960
000961 GCCAGGCGCA GTGGTGCACA CCTGTAATCC CAGCTACTTG GGAGGCTGAG CATGAGAATG GCTTGAACCC TGGAGATGGA 001040
001041 GTTTGCAGTG AGCCAAGATT GGGCCACTGC ACTCCAGCCT GCACAACAAA GCAAGACCCC GTCTCAAAAA AAGTTGTCAG 001120
001121 TTCCTTAGTC CCAAAATAGA GAGCTTATGC TTAAAACACT CCAAAGAATC TGTTCTGTTT TAAATATGTA AATATCCTTT 001200
001201 TTTAAAAAAA TAATTTATTT CTTCGAAAAA AGTTCAGTAG CCTTAAGTTG AATTGTTGAA ACGTGGAGAT TTATTATGAC 001280
001281 TTGGTTTTTA AATTTCTTTG AAATTCTCCA CAATAATAAA GTAAAAAGAG ATTAATAAAA AGTTCTTTTC TTAAACTGTG 001360
001361 AAAGCAATTG TAGACATGTG GAAAGATGTG CAAAAGAAAA CAAAATTAAC TCATGATCCC ATTAACTATG GTAATGGTTA 001440
001441 GGCTTATTTC TCTCTACATT TTTCCCTTTG CGAAGTGTAT TTAAATAAAA TATTCAGTAT TGTATTTTGA GCTTTATGAC 001520
001521 TAATGATTAT TGTGTACATT TTGTCAGTAA TTTAACAACT ACTTAAAGTT GCTGCTTTTA ATGATCATTC AGTGTTCTGT 001600
001601 CATATGAATG GATCATCATT TATTTAACCA TTCTCTAACA GGTTATATTT AGGACAGTTA GGTTACATTT CATTATTCAT 001680
001681 TACTTTTTTT TTTTTTTGAG ACAGAGTCTC GCTCTGTCGC TCAGGCTGGA GTGCAGTGGC ATGCTCTCGG CTCACTGCAA 001760
001761 CCTCCGCCTC CCAGGTTCAA GCGATTCTCC TGCCTCAGCC TCCTGAATAG CTAGAACTAT AGGTGTGCAC CACCACGCCC 001840
001841 AGCACTTTGG GAGGCTGAGG CAGGAGGATC ATTTGAGGCC AGGAATTTAA GACCAGCCTG GGGCACCATA CTGAGATCCT 001920
001921 ATCTCTACAA AAAAAAAAAA AAAAAAAAAA
[back to top]

Predicted Small Protein

Name NONHSAT104768_smProtein_101:211
Length 37
Molecular weight 4139.0006
Aromaticity 0.0277777777778
Instability index 89.0666666667
Isoelectric point 10.8715209961
Runs 7
Runs residual 0.013986013986
Runs probability 0.0381558028617
Amino acid sequence MWMPGILRKGLRTKQRTRSCLCSQPLSAQHMGHCIL
Secondary structure LLLLHHHHLLLLLLLLLLLEELLLLLLHHHLLLLLL
PRMN -
PiMo -