NONHSAT104343
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104343 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4752 nt |
Genomic location |
chr5+:142544478..142606050 |
Exon number |
3 |
Exons |
142544478..142545009,142593562..142593653,142601923..142606050 |
Genome context |
|
Sequence |
000001 AATCAGTGTG TCGGGCCTCA AAAGAGAAGA GCAATGTGAT TTCATGTAGA ACCCTATTTG TATGCTGCCA CAGCCCTATG 000080
000081 CTTTGCTTTA CTTCGGATTC ATATAGAAAT CCAAGAATTT GTAGTAAGTA AGAGAAAGAA AACACCATCT CTGCTCAGCT 000160 000161 GAGCTGGCCC GTGTGCCGAA CTAGGAAGAT GGCTCTTTTC CTCTGGAGAG GATATGATCT TTTCAAGGTT GCTTTTTACA 000240 000241 CATCACCATG GGGCTGGCCT GGTTGCATGC TGAAGCTGTG AAACCTGAGT GTGTATCTGT GCAAAGCTGG GGTCGAATCA 000320 000321 GGGCCCCTAG GGGCCCTGCA CTGGTTTTGT TGAGTGGAAC ATACAGGTTG GGGTTTTTGG AGGCTGGGTG GGGAAGAGGG 000400 000401 AGGAGAGATG AGGGTGTTGT CAGTGAGGGA GGAACTTTGG GGAACAGAAA TATCTAAAAG GAAGTTTAAT GGACTTTCTT 000480 000481 GTACACGGTG CATAATGTGA ATCCTCGTCC ATGTCACCTC ATGCGGGCTT CGCACACCGT TCCGGAAGGC AAAAGCCTTG 000560 000561 TATGCCTGCA AAGCTGAACA TGACTCAGAA CTTTCGTTCA CAGCAGGCAC GGTCTTCGAT AACGTTCACC CATCTCAGGA 000640 000641 GCCTGGCTGG TTGGAGGGGA CTCTGAACGG AAAGACTGGC CTCATCCCTG AGAATTACGT GGAGTTCCTC TAACCGTGGG 000720 000721 CCCCAGCAGA ACTGCTGAGC TTTACATGGT ATCCATGACA ACTGCTGATT CCAGTGTCGA GGCCATTTCT CTTTGCCACT 000800 000801 GAGAAATGCA GCGTGACTGA CTCTGTTGCT ACCTGTCAAC ATGAATGTTT CTGTGAGCTC TGGTGTCACT CATCTCCATG 000880 000881 ATCATCTCAG CCAACATGCA TCAGTACTGC AAGAAAAGAA GTCAATCAGC AGAGGAGAGC ATTTGATAAC TAAGAGGAAG 000960 000961 ACTTGCAAAG CCGTTTTCTC ATGAGTACCC TGAATAGGGG GCACTCATTT TGTTTCAACG GTCCAAACGC CCAACCTTCA 001040 001041 GAAAGAGGAA GTCAGATAGA AATAGTCCCT GAGAGCACAC TGTGTAGCTA AGCCTGCTGG GGCTGGGTGA AGAAATTGGC 001120 001121 GCTGAGATCC AGGCTGGATC CATTGCTTTT GTTTACAATA GGCACTCTCT CTACCCCACC TCTCAGTACT TGAGACTTAA 001200 001201 AGTGCTACAG GCAGCTGGAT CTGTTTGCAT GCAGGATGAA GAGGGTTAAA ACACTGTTTA TATAAGATCC AATCTCTCAC 001280 001281 CATCTCTAAA GCAGCCGTTG GCCTGTCATC AGTGAGATAC AATCCAGTCT TCTCATGCAC GGGAACACAC ACACCCTGCG 001360 001361 TTTCTCCCTC CCAGGCTAGG AACCTCTCTG CCACCAAGGG CTGCCATCCA TCGCCTAGTA ACCACGGCAA CCCAACCTAC 001440 001441 TCTAAAACCA AACCAAAAAA ATAAAATAAC ACATCCTCTT TGCATGACAC ATTTTTTTTC TCCCCTTTTT GGTACACTTT 001520 001521 TTTTGAATGG TTTTCTAACA ACTTGAAGCA CAGGATCAAG GAATTAGGGT GGTCTACTTG AGGCAGATGG GATAGTAGCT 001600 001601 GGGAACTGTT CCCTTTCTGA TTAATTTCAG CAGCATCGGA ATATATTTGG AGCACACCCT AGTAACCTCT TGAGATTAAA 001680 001681 TTACATAGTC TTAATATTTC TGTTCCTCCA TGCAACTGAT GTTTGTTTTT TAAAGGGTAA GATGCTGCCT CCCAATGGGT 001760 001761 GATGCCATCT GACTGGTTTC CCCATGTCCT CCCATTCACC CATCTCTGCT CCCACCCTTG CCTGCCTCTA ACCCACCACT 001840 001841 GGCCAGCCCC CTTGCCCTAC TCTGGGCTGC TGAACACTGG TGCTGTGGTG GTTTTCAAGG TTAATTCCTA GGCTAACCGT 001920 001921 ATGGCCTATA GTTTAAAAGC ACATCTATGT TCACTGCCAC TCTGAAAAAG GGAATTATTT CTCAGTCTTT CAAGGCTTGA 002000 002001 GACTAATATA GGCCATTGTG ATTCAGGAAG AAACCCAAGG TTGGAGGGTG GGATGAGTAC CCTCTGAAAA AGGGAATTTG 002080 002081 CTGGTGAAAA GAGGCTGGAT CTTGTGGAAG ACTGTCTTGG ATGGGGAAGT ACTACCTGGA GATTTCAAAT TCACTTGGCC 002160 002161 TGCAAACAAC AGAGTTATCC GTATCTTCCA CATGTGAATG TCATTGCAAG GGTGACTCTA GACAAACTAC AAACCGATGG 002240 002241 ACCGTCAAGC TCCCCAGGAG CCCCTTGGAT GGCAGCGTTG CTTCAGAGTG TTTCCTGTTT CTGGAATTCC TTGTTAGGGA 002320 002321 ACTTTAAAGA AGAAAAGAAA AACTTGAATT GTGTTGAATT ACTGTATCTT TTACTTTTTT TTTTTTGAAA AGATAAACTT 002400 002401 GTAAATAGAG TGATTTGAAA TACTATATGG CAAAGTTTTA TATTTGATAT TCTTTAAGTT AGTTGCTCAC ACACTTAGGC 002480 002481 TTTGATTGCT GAAGAAGTAT GTTTAAGAGG GAGAGAGGGG AGGCAAAGCT GAAGAGAGTC AAGGTCACTG TCCCCGCTTC 002560 002561 GGCCTGAAGG AAAGAGAAGA CATTTCTATG GCCTTGCTCT CTGCTGTCCT GTTGGTGGGC ACGACACATC AGTGGTGTTC 002640 002641 AGTCTTTATG TGTTTTTAAG CATCCCTTGG GCTTTGGATT TGGAGATGGG AAGAGCATCT CCAGGCAATG AGTTTTTCAA 002720 002721 AGAATGCCTA CTTAGTAGTA AGATGAAGCT CAGGATTTAA ATAAGTGGGG TCAGGCATTC GAGTTTTTGT CTTTCTTCTC 002800 002801 AGGTGTATTT CTTGGTACCC CCAAGATATC AGGCCAGAAA GAGATGAGTC AGTTGCTGTG CTCTTTACTT CTTTTTCTCC 002880 002881 ACATCTTCTG AGGCTTTAGA AATGTGGACA AGCTAGTTTT CAAATTTTGT GTGCGTCTGT AAGTTCTTAA AGAACCAGCT 002960 002961 TCTTAGAATG TTCAGTTCTC AATGTGCTGC TGCTTTCCCT TCTCCTAAAC ATTTTAAAAC TCTTCCCTTT CACCTCCAAT 003040 003041 TCCCGTGATC CCAAAAGAAG AGGAAGACTC CAGGAGGGGT ATAGATTGTG CCGTCATAGC TTTACAGGTG GTTTTAAAGT 003120 003121 TAACAGGGGT TTGTCATGGT GATTCACTAC TCAGTTTATC AGCTCAAGGA TTATACAGCT CTTTTCCGGG AACTCACCCA 003200 003201 GGAGCAAGCG AGACACTACC ATTGAATCAG GGAATGAGAA TTAAGAATGG ACAGGACCAA GACAGAACTC AAGAAAGCCA 003280 003281 CTGGGGAAAA CTCGAGAAGA AAGGGAGTAT ACTAGTAGGT TAGATCTGTG AACCTGAGGA CAAGAAGACC TTGGGAAATG 003360 003361 GAGGCCTCAG GGGATGTGCA TTCACATACT ATTACGCTTC TCAAAGAGAG ACCAACATCA TGCTTTTAAC ACATTTGATG 003440 003441 AGGtttttta tttgtgtttt tgtttgtttt ttgagatgga gtctcactct gtggcccagg ctggagtgca gtggcgcaat 003520 003521 cttggctcac tgcaacctcc acctcccagg ttcaagtgat tctcctgtct cagcctccca agtagctggg actacaggca 003600 003601 tgagccatca cacccagcta gttttttgta tttttagtaa agatggggtt ttgccatgtt tgccaggctg atctcgaact 003680 003681 cctgacctca agtgatctgc ccacttcaga cccccaaagt gctgggattc caggtgtgag ccgctgcggc cgaccACATT 003760 003761 TGATGTTTGA AGTTGTAATC TGTCCCATCA TAAACTTACC TGGAGCTCAT GTGGAGGAAC AGAAGGCCAA GATCCTTGCT 003840 003841 TTGGGGGTGC CTCACGAAGC ATCCCTGTAG ACATTTGGCC CCAGCTTCAC TGCTTGGAAG CATGTCCCTC CCTCTTGAGT 003920 003921 TGGCTCTGAT TTGAAATCGG GAGAAACAGA GCTGCTGCCA ATGGGATCTT TTAGGTAACT CCCTCCCTAG CTTCCGTGTG 004000 004001 TCTGTGCAGT GCCCATGAGC TGCTGCCAAT GGGATCTTTC AGGTACCCCC TCCCCAGCTT CCCTGTGGCT GTGCGGTGCC 004080 004081 CTTGACAGAT GGCTTCTCTG TTTCCCTTTG CCCAGCCAGG CTCCCCTCCT TCCTATTAGC TACAAAACTG GATAAACTTC 004160 004161 AGAATATGAG CCAATGAGTA GGAAGGAACT TGAAGACTAA AGATTTTACT CTCTCCCCTA TCCATGCCCC CTACCTCTGA 004240 004241 CTCTCTCTGT GTGAACAGGA AACTTTAGGG CAGATGAGGA GAATGAATTG GTTATCAGAG TGGAAGACCA TGGCCCAGGA 004320 004321 TCCCTGAGCT TTCCCAGTAG CCTCCAGTTT CCTTTGTAAG ACCCAGGGAT CACTTAGCCA TAGCCTGAAT CTTTTAGGGG 004400 004401 TATTAAGGTC AGCCTCTCAC TCTTCCTTCA GGTTACTAAC AAAATTTCGT AGCTAAAGAA TGCCATggcc gggtgcagtg 004480 004481 gctcacgcct ataatcccag cactttggga ggccgaggcg ggcggatcac gaggtcagga gattgagacc atcctggcta 004560 004561 cgacggtgaa accccgtctc tactaaaaat acaaaaaatt agccgggtgt ggtggcgggc gcctgtagtc ccagctactc 004640 004641 tggaggctga ggcaggagaa tggcatgaac ccaggaggca gagattgcag tgagccaaga tcacgcccct gcactccagc 004720 004721 ctgggtgaca gagccagact ccgtctcaaa gg |
Predicted Small Protein
Name | NONHSAT104343_smProtein_3419:3670 |
Length | 84 |
Molecular weight | 9104.7172 |
Aromaticity | 0.0963855421687 |
Instability index | 48.2698795181 |
Isoelectric point | 7.67376708984 |
Runs | 12 |
Runs residual | 0.0045515394913 |
Runs probability | 0.045751633987 |
Amino acid sequence | MLLTHLMRFFICVFVCFLRWSLTLWPRLECSGAILAHCNLHLPGSSDSPVSASQVAGTTG MSHHTQLVFCIFSKDGVLPCLPG |
Secondary structure | LHHHHHHHHEEEEEEEEEEEELLLLLEEELLHHHHHHHHLLLLLLLLLLLLHHHHLLLLL LLLLLEEEEEEEELLLLLLLLLL |
PRMN | LLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiii |