NONHSAT104331
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104331 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1030 nt |
Genomic location |
chr5-:142239169..142248475 |
Exon number |
6 |
Exons |
142239169..142239307,142239567..142239726,142239870..142240128,142246375..142246450,142247422..142247654,142248365..142248475 |
Genome context |
|
Sequence |
000001 CGGGCAAGGA AACACAAGCT GGCTTACAGG TGGAACACCT GAGAGTCTCC AGAGAGGACC CATGACAGAG AGCTGAGACA 000080
000081 TGGATGGACA CGAGCCCCAG AGAGACTTCA GGTAATTCTT CTCTTCAAGT AATGCCTCCC CAACTAGTAC ATTCTATAAG 000160 000161 GATGAGGATC ATATCCCTTC ATGCTCACCA CTCTATCCCC AAAGCCCAAC ACTCTACTGC TTGACTGAGA GCAGGTATTG 000240 000241 CAGAAAGAAC AAAGAGAGAG GAAGTTGGGC ACTCCATAAG TCCATTAGCC TTCATCAGAG GTGAACCTCC CAACTCAATG 000320 000321 TTTGACATGT GAAAAAAAAA GCAGATCTGG CTGGAGCAGA TTCAGAAAAC CTCTTATCTC CCCCAGGCGG ATGATGTGCC 000400 000401 CACCGACCAC ATCAGCCACG AAACCCAGCT CATGGCACCT GGAGCTGATG AATGGCCCTG GTGCTGACTG CCCAGAAACC 000480 000481 AATCCGGAAA CCAGGCTTCC CACAGAAGAC GCAGCTGGAG AGCCAAGCAC TCTTGGACTA CAGTCCTAGG CTGGAGCTGC 000560 000561 CAATACAGGC TCTGCCCAGC TAATCTTCTC TGAGCCTGCA AATATTAAAC CTGACATACA GACTCAAGTG AATCCAGAAA 000640 000641 ACAGGCTCAC AGGGCAGCTG AAAATTCCAA GTGCCTAAGT GAGATCCAGT GCGACAGTGG AGCATGTGTG CGCAGAGGAG 000720 000721 ACAGGAACAA CAACCGGGAT GTCATGCGGG CCCACTGGGG CTCCTTGTGG CCCCAGTGCA CAGAATTCTG GTGGACCCAC 000800 000801 CATGTGTGGG AGCTCAGTGA GACTCAAAGT AAGTGCAAGG CCCTCCTCAC ACATCGTACG CTGAAGGTGG AGCACACTGG 000880 000881 GAAAATGTGC ATGCATCAAG AAGGAAAATG AAAACTGATT TTGTGCAACA TTTCCACTGT TCTTGGAAGA ATGAAATAAA 000960 000961 TGCATATGAG CTATGAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT104331_smProtein_743:910 |
Length | 56 |
Molecular weight | 6647.6118 |
Aromaticity | 0.109090909091 |
Instability index | 43.0581818182 |
Isoelectric point | 8.59625244141 |
Runs | 9 |
Runs residual | 0.0121212121212 |
Runs probability | 0.0483326463719 |
Amino acid sequence | MRAHWGSLWPQCTEFWWTHHVWELSETQSKCKALLTHRTLKVEHTGKMCMHQEGK |
Secondary structure | LLLLLLLLLHHHHHHHHHHHHHHHLLLHHHHHHHHLLLLEEEEELLLEEEELLLL |
PRMN | - |
PiMo | - |