NONHSAT104180
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104180 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1230 nt |
Genomic location |
chr5-:139713109..139714715 |
Exon number |
2 |
Exons |
139713109..139713865,139714243..139714715 |
Genome context |
|
Sequence |
000001 attacaggca tgagccaccg tgcctagcTC TATGCCTGTT TTCAAGCAGt gtaactcatc tgtcatgaga cctggaacaa 000080
000081 gttactgtct ttctgaggat tgtaaccttg tagtgattgt aatgtttgtc catctacctc ataaggatgt tgtgaggatc 000160 000161 acgtaaatga ggtgaaagct atttgtaaat tgcatcctgc tatTAGAGAC AGGAGTTCCT CGGGGCAGTT GGGCCTTTGA 000240 000241 CCAGAGTTTG GGCTGCCCTA CTGCCTGGGC TTTTCCAAGT AGTAGAGGAA ACCACCATGG CAGAGTTCTT TGGAAGGACC 000320 000321 TGCTCTGGAC CTGCACTTTG TCATAGCAGG CAGGGCTTAT TCACAAAACT TATCTTCCTC AGGTACCATA GGAGAGGAGG 000400 000401 TTATGATGTG GAAAATGAAG AGAAAGTGAA GTTGGGCATG ACTAATTCCC ACTGAGAGAG ACTTGTGCTC AAGGAATCGG 000480 000481 CTGGGGACTG CTACCTCTGA GAAGACACAA GGTGATTTCA GACTGCAGAG GGGAAAGACT TCCATCTAGT CACAAAGACT 000560 000561 CCTTCGTCCC CAGTTGCCGT CTAGGATTGG GCCTCCCATA ATTGCTTTGC CAAAATACCA GAGCCTTCAA GTGCCAAACA 000640 000641 GAGTATGTCC GATGGTATCT GGGTAAGAAG AAAGCAAAAG CAAGGGACCT TCATGCCCTT CTGATTCCCC TCCACCAAAC 000720 000721 CCCACTTCCC CTCATAAGTT TGTTTAAACA CTTATCTTCT GGATTAGAAT GCCGGTTAAA TTCCATATGC TCCAGGATCT 000800 000801 TTGACTgaaa aaaaaaaaga agaagaagaa ggagagcaag aagGAAAGAT TTGTGAACTG GAAGAAAGCA ACAAAGATTG 000880 000881 AGAAGCCATG TACTCAAGTA CCACCAAGGG ATCTGCCATT GGGACCCTCC AGTGCTGGAT TTGATGAGTT AACTGTGAAA 000960 000961 TACCACAAGC CTGAGAACTG AATTTTGGGA CTTCTACCCA GATGGAAAAA TAACAACTAT TTTTGTTGTT GTTGTTTGTA 001040 001041 AATGCCTCtt aaattatata tttattttat tctatgtatg ttaatttatt tagtttttaa CAATCTAACA ATAATATTTC 001120 001121 AAGTGCCTAG ACTGTTACTT TGGCAATTTC CTGGCCCTCC ACTCCTCATC CCCACAATCT GGCTTAGTGC CACCCACCTT 001200 001201 TGCCACAAAG CTAGGATGGT TCTGTGACCC |
Predicted Small Protein
Name | NONHSAT104180_smProtein_296:454 |
Length | 53 |
Molecular weight | 5989.8058 |
Aromaticity | 0.115384615385 |
Instability index | 46.2384615385 |
Isoelectric point | 9.23565673828 |
Runs | 8 |
Runs residual | 0.00347674923946 |
Runs probability | 0.0255034446211 |
Amino acid sequence | MAEFFGRTCSGPALCHSRQGLFTKLIFLRYHRRGGYDVENEEKVKLGMTNSH |
Secondary structure | LLLEELLLLLLLLLLLLLLLHHHHHHHHHHHHLLLLLLLLHHHEEELLLLLL |
PRMN | - |
PiMo | - |