NONHSAT103654
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103654 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
3622 nt |
Genomic location |
chr5-:127395133..127419482 |
Exon number |
2 |
Exons |
127395133..127396936,127417665..127419482 |
Genome context |
|
Sequence |
000001 GGCAGCCGAG CGAGCGCGCG AGTGTggcgg gcgcggggcg ggccccgcTG TTTAAAGCCT CGGCGGGGCT GCGGCGGCGG 000080
000081 CGGCTCCGGC AGCAGCACGC GGGAGGCGGG GCCGGAGGCT CCTCCGCCCC TCAGCCCGCC CACCCGCGGT CCCGCAGCGG 000160 000161 CGCGCGGCTG ACGCTCCCTC AGCGATCCGG CCCTCCGCGG CTCCTGCGCG ACCCCACGCA AAAGCGCCCC GTGCGAAGAG 000240 000241 CGCGGCCAGC CAGTCCGCAA AGGGCCTCGG GCAGTGCGGG CAGCACGAAC GGCGCGATCG GGGAGCAGGC GCGGCTACGC 000320 000321 TCCGCCTCAG TGATGTCGCC GGGAGGATCT CCGCGCGGCT ACCTCCTCTT CCGCCGCCTT CCTCCCACGC CTTCACCTCC 000400 000401 CTCCCCCGCC GCGCTCTGCG GCGAAAAGGA GCGGGCTCCC AGGCCACCTC CCCTCTCTCC ACCCAGGGGC CGCGCGTCAG 000480 000481 TGGACCTGCA GCCCAGGCAA CGGGGCTGCG GACGGCGCGC GTGCCCTGCC TCGCCTCACG CCGGTAGCTG ATGCTCCCGC 000560 000561 GGCAGCTGCC ACCCCAGCGC CCCAGCCACG GCTTCAGAGG CTCTCGCACG CTGGCTTTTT TTTTTTCCCC CCGCTTTGGT 000640 000641 GAACTCGCAG TACTTGGGCT GAGCCCGAAA TCTCGCGAGA TGCTGCAGGC GTCAGTGCGG CTTCCCACTA GGCGCGTGGT 000720 000721 ACCCGAGGCC GGGCCGGAGC CGCAGGCCAG CCGCGATTCC TTCGGGCGAT GCTGGGGGCT TTCCGGTCGG GGCCGCAGCC 000800 000801 GCTTCCGGAG CCGCGGGCGA GGTGCGTTCC CCAGCCTGGT TTGCTCTGGG CTCTGACCCG CCGCCGCGAA TCTCCGCTCG 000880 000881 TAACTCCGGG CCTGAACCTG GAGGAGGGAG GATTTCCTCT GTGCAGCTTT CGAGCGGTAG ACTCACCCTG CCAGGCAGAC 000960 000961 CTAGATTGGC ATAACCAGAG ATCAGTTCCA GTTGTGATGC AGTGGGTGTC TACACACTTC TGATGACACC TTTATTTTAA 001040 001041 AAGCTGATGT TCCAAGGTGA GAAGGGAGCT TCTTTGAGAC GTCATGTTGT TTCAAGACGA GTTTTAATTT AAGGCATTTC 001120 001121 CAAAAGTGAT ATGCAGCTCA TCTCTCAGAA TACAATGCCG GCAATAACTA CCCGTGGAGT CCTTACCAGG AGGTTTCTGC 001200 001201 GTGATTTGGG TTGTGCAGAA TTCCTCTGCT TATATAGAAA CAGAAAGGTA CTCCTCTGCA GGTCTAGTTT CTCTTCGGTA 001280 001281 AAATGTAAGG GAATATAACT GTGTTCCCAC TTTCTTAGCA GCAGAAATTT TTAAACCTAT AGATTATGCC CAAAGTCCTA 001360 001361 AGTAAAATCA ATGAATGGCG TCCTCCAATT ACTTGGTTTT TATTTATGTA Cttttttttt ttttttttga gacggagtct 001440 001441 cgctctgtcg cccaagctgt agtgcagggg tgcgatcttg gctcactgca aactccgcct cctgggttca cgccattctc 001520 001521 ctcctgcctc agcctcctga gtagttggga ctacaggcgc ccgccatcac gccctgctaa ttttttgtat ttttagtaga 001600 001601 gtcggggttt caccgtgtta gccaggatgg tctcgatctc ctgacctcgt gatccgccca cctccgcctc tccaagtgct 001680 001681 gggattacag gcatgagcca ccgcgcccgg ccCTTGTATT TTTAAACTTT GACTTTATGG AGACGAACAC CATCGTTTGC 001760 001761 TGAACACTTG AAACATGATG AAAGAGCCAC AGAGTTGGCA GAACTGTTTG AAAATGCTgt gcaagcggtc ttctctgtct 001840 001841 tctttatggc cagtaaaatt ctccagaaga gatttatggc agcctcactc ccagtagttt ctgcatttag tgagataagg 001920 001921 taagttctga gaaggctttt ttctgcatct gttgaatttc aaatgtcttt agaataatct ttatatcaaC TCTGGGGGTC 002000 002001 TCAGTGAGTT CCCACAGGTT GTTGTGAGAA TAACTAAGGT AATATGGCAA AACTGTTAAG TTAGCACTCC ATAAATATTT 002080 002081 GCTTTTATTA TTATTTGAAA ACTAGTCTTT CTGCCTTGAT GCCAGTAGCA GATGGGAAAT TATGGTGATT TTTATTTCTA 002160 002161 ACATTGATCC ATTTTACAGA TCAGCCAGTC TGCTTAATTC CTGGGTCAGC ATTTCCTATG CAGTTACCCA AGTGCTGATT 002240 002241 CATTGCTTTT TCTCATATTC AATTAAACTC CCCATCTAAC TTTTCCAAAT CAATTTCTTC CTGACTGTTG ACTTAGAATT 002320 002321 CATTGCAGTT GTCCTAAATA ATTTGAGCAA CTCAAGAAAA TTAACATCTG CTGAGATCTG TTTCTACCTT TCCTAAGTTT 002400 002401 CTCTTCATTC CCTTTCAGTA CCCTGGGATG TCACTCAAGT CTCTTTTTAA ACCTATATCC ACTTCACCTC ATTTGGCTTT 002480 002481 TTGCCTATCA GAGGTGAAAC AAAAGAGTGA AATCTTTGCT TGTGGAATCC TCTCATGTCA TCAATTGTTT ATAAATGTTT 002560 002561 AGTATTTAAA GGACCACTAA GGGCCAGTGG GGAAAATGAA TCTTATGGAT GGATATCATC ATTTTTTGCT ACTTAATAAT 002640 002641 GTTATGGACT TTCAAATGAG ATTTCTGTAA CTGGAATGAG AAAAATCCTA ATAAGTTTAG GATGGGTCAG AAGATTTGtg 002720 002721 caatggagtg aatgcttgtg tgcttcccaa atttcgtatg ttgaaactat aatcccaatg tgatagtagt tgatggaagg 002800 002801 gcctttggac agtggagccc tcatgaatgg gattagtgct cttaaaagaa gagaccagag agctagctag ctgtctttcc 002880 002881 accatatgag ggtgcaatgg gaagctggca gtctgcaacc agaagaggac cctcaccagt ccctcaccgt tctagcaccg 002960 002961 tgaactcaga cttcagtctc cagaactgtg agaaataaat ttctattgtt tatgtcaccc agtttatagt actttgttat 003040 003041 agaagctcaa attgactaag ataATTTGGA TATTAGGTTA TATCGCTTGC AGGAGGTATG TAACTTCTTG AAACATGTAA 003120 003121 ACTCTCTGTG TTGTGTTCTG CTGCCTAAAT CCACCAGATA AATATTTGGT TTACTTTGCT TGGGAAAACT GTTACTCAAA 003200 003201 TGTTCTCTGT ACAAATGCAG GAGAGTAAAA TTATTTCCCC ATTTTATATC AGTAATTGCT ATTTTATTTG TCAGTAAGTG 003280 003281 TTTCATTATG ATTTAAACAA TTGGTATAAG TATATTAATA TAATTATTTA CTAGTTGCTA AAAATATATG CTGCATCTTA 003360 003361 TGAAAATACA TTTAAAAAAC ACTCGAATGG GTCATTTGAC ATGAAAGCAT CATTCGATTT AGAATTCAGA GACTAAGTTG 003440 003441 CCAAAAGAGG AAAATATTTA ATACCATTCC CTGAAGGCTA GTAAGTTTAT AATTAGCAGG ATCACCAGAG GGAGTAAATT 003520 003521 TAGAGCTGAA AACCACTCAC TGATTCTGTA GTATACTTGA ATAAAATAAG GTCACTGTCC ATGTAGCTGG CCAAATAGCT 003600 003601 TGGCACAATA TGGAAGAAGG AA |
Predicted Small Protein
Name | NONHSAT103654_smProtein_332:550 |
Length | 73 |
Molecular weight | 7562.6281 |
Aromaticity | 0.0277777777778 |
Instability index | 108.920833333 |
Isoelectric point | 11.5856323242 |
Runs | 7 |
Runs residual | 0.0436942416869 |
Runs probability | 0.043568778863 |
Amino acid sequence | MSPGGSPRGYLLFRRLPPTPSPPSPAALCGEKERAPRPPPLSPPRGRASVDLQPRQRGCG RRACPASPHAGS |
Secondary structure | LLLLLLLLEEEEELLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLL LLLLLLLLLLLL |
PRMN | - |
PiMo | - |