NONHSAT100545
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT100545 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1294 nt |
Genomic location |
chr5+:14620129..14621422 |
Exon number |
1 |
Exons |
14620129..14621422 |
Genome context |
|
Sequence |
000001 TGGTGGCTGT TCTTACTAGT CAGAGTTGCA TTTGTGGCTT TCTAGACATT GAAGTAAATA AAAACAAGAA ATCTTAGTAG 000080
000081 GGCTTCATAG TGAATATCAG AAAAGGTAGT TTGGTATTAT AAATGGATAA TGCTACAAAA TATATTTCTG GATCAATGTG 000160 000161 TGTTGGAGAC ATTAAATTTA TCTACATTCC AAAGGTTAAC AATGGCACTA AACCAAGCCA AGGGGAGAGT TCTAGTTTTT 000240 000241 TTGTTTTACT TTGTTTTAAA AATAAATTCA GAAAAGAGAA AATATTTCTT ACAAGCTAAT GATCAGCAAT ACCTAGTGGA 000320 000321 ACGAGTAATG TTGAACAATG CTATGGAAAG ACAGTATCAA AAGCAGACGG ACTTGCAGTT TCATTCTAAT AACCTCAGTC 000400 000401 TCCACATTAA ATAACTGTGG GAAGGAGCAA GTACCTTATA GGACAGATAC TGTTGGTGCT GTACCCATAG TTACTCTAGC 000480 000481 TCAGGAAAAA GGAAGTAAAT AAATATGGTG AAGTAATTTC AAATGGTTCC AAAGCCATTT CCTTACCTTA CTCCTAAACT 000560 000561 ATCTGTAGAT AATTGGACTT TCAAAGTCAG TTATTGTGTT AAACAAGGGG CAGTGATGAA AAACTGTAAC CAGACATTTT 000640 000641 CAGATGGATG AAACAAAGTA GGCATTTTCA AATATGAACT GGAAAGGGAC CTCTCCACAT AATGCACTTA AAGAGGTTTA 000720 000721 TAAAGTCCCA GAATGTAAGC AAAGACACAT AATGATGAGG GACAACCTCT TAAAAATTCT AACAAACTGT TCATTGTTTC 000800 000801 CCACAGTTCC TCTGTGTAGG CTGATGGTCC TACGGAGGTA AATAGTTAGA TTAATCTGAT CTTTGGTATC ACTGTATCCC 000880 000881 AACAGGGACC AGGAAGATCA TCATCATCTA TGTGGCAGAC TAAAAGGCTG TTAAATATTT GTATATAGAG AGAATTAAGT 000960 000961 ATCATACTAA AATACAAACT TTGTGATTAA TGAGTGACCC TCTGATAGCT ACTTTACAGG AGCATCCTAA ACATTTCTCA 001040 001041 GCATTCATCT CATCACACTT TCGTTCATTC TATGTAACTG CAGCCAATCT TATATTCCAC AGTCCTTTAC AACAACTCTT 001120 001121 TGTTTTGAGC TTTATTATAG TGGAGGTAGA CTTTTATGAG TATTTTGTCA AGAGCGAGCC AGGGAACTTC CATATTATCC 001200 001201 TTTCAAGAGA ATTGGCTTCC AAAGTGACTT TTCAagagaa ccagaagggt catcccatgc cttagtagta gagctaaact 001280 001281 atcccagaat agag |
Predicted Small Protein
Name | NONHSAT100545_smProtein_989:1264 |
Length | 92 |
Molecular weight | 10542.9657 |
Aromaticity | 0.153846153846 |
Instability index | 50.3782417582 |
Isoelectric point | 6.26422119141 |
Runs | 16 |
Runs residual | 0.0423534798535 |
Runs probability | 0.0187632485427 |
Amino acid sequence | MSDPLIATLQEHPKHFSAFISSHFRSFYVTAANLIFHSPLQQLFVLSFIIVEVDFYEYFV KSEPGNFHIILSRELASKVTFQENQKGHPMP |
Secondary structure | LLLHHHHLHHHLHHHHHHHHHHHHHHHHHHHHHHHHLLLHHHHEEEEEEEEEEEEEEEEE ELLLLLEEEEEEHHHHLLLEEHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |