NONHSAT100187
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT100187 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3107 nt |
Genomic location |
chr5-:6019142..6022396 |
Exon number |
1 |
Exons |
6019142..6022396 |
Genome context |
|
Sequence |
000001 ATATTTTCAG CATCACATTT TAAGAATAAT ATGTGAAATA CAATATGTTT TATTAGTCAC CTTTGGAAAA TACAGTCTTC 000080
000081 CACAATCTGG AACCACCTCT TTGGTTCAAA ATGTGCCATT CTTCTGTAAT GTGTGTGATA AACTTAAAAA AAATCTGTAT 000160 000161 CCTTTATCCT AATCATCTTA CTTGGACATC ATCCTGAAAC AAATGACAAA AACATTCACA GTTTTATATA CAAAGTTATT 000240 000241 GGTAACAATG TTCTTAATAG AATTCAATTA GAAAACATAT AAAGGCAAAG GTAGAGTTAT TTGATGTTAT GGTTTGAAAG 000320 000321 GATTCCCACA CCCTCATGAA TATTCTTTAT TATGCCAGAG GGAACCTAAT TCCCCTGCCT TTGAGTGTGG GATGGCATTG 000400 000401 ATGAGTTACT TGTACCACAT ATAATAGGCA GGAAGTGATG GCACGTGACA TTGGAAACAA CTTCGTAAAA GTCACCGAGA 000480 000481 CTCATTCCTT GCTTTCTCCT ATGTCTCCCA CCTGGCAGGA AGACATTTGC CATCATGTAA GGAGAGTTCT GCTTAGTGAG 000560 000561 GCATTGACAT CTCCAGCCAG CAGTGCCGTG AGGGAGGTGG GCAGCTCAAG CCTCAGTCAA ACCCTGAGAT GACCATGGTC 000640 000641 CCACTCAACA TCTCAGCTGT GACCATGTGG GAGAATCCAA GCCTGAGCCA ATCAGCCTAG CTGCTCCCAG AGTCCTGACT 000720 000721 CTCAGAAACC ATGCCAGATT ATACATATCT GCAGCTTTAA GCTTCTGAGA TTTTGGAATG ACTGATGACA GAGCAATAAA 000800 000801 TAACTAATAC ATTTCACCAC ATATCACTTA GCAGAATGCC ATGGAGCTAT TAAACACAAT ATTTTATGAA GATTAGTCTA 000880 000881 TGATATGGAG ATATACTCAC AATGTTATTA GCAACACAAC TAGACCAACT GAGTATAGGT AGTATAATCT CAATTTGTTC 000960 000961 TAAAAATATA AATCTGTACA AAGATAGAAA GACCAGAAGA AAAAAACCAT TTAATACTTG ATAGATAATT ACAATGGTAA 001040 001041 AGAATTTAGC CTTGATCACT TGATTTGAGA CGGAATCTAA CTTGCTAGCT GTATATCCAT AGTGTGGATG TGTAACCAAT 001120 001121 GATTTGTAAA CTAATTCTCA GTTTACTCGT CTATATAAAA GAGCTAGTAA TATTACCTAT TTCATGCGGC TTGGGAGAAA 001200 001201 TGAATCAATA ATATATAGAA GGGCTTAGTT CTCATATTGT GGCAAGTACT TCACAAATGA TAATTTTTAC TATTACAATT 001280 001281 TTTATAAGGC TTTCTGTAAT TCACAAATTT TCTAATATCT ATTTTATGAC TTTTGAAATA ATTCTTACAA TATCCCTTTT 001360 001361 AGTAACCTTT ATTACAAAAT CTATTGTAAT CTCTTAAAAT AATATTCCTT TTTGTTTTTC TCCGAGATAG TCTATCTAAT 001440 001441 GATGTTACAA TAGAGTTACC AACAAATGCC ATATTTCATT CCTGAGCGTC TATATTCTTG AGTTCCTAGC AACAAAGAAC 001520 001521 AAAGTAGCAA CCATTTCTTA AGAAAATGCT GAGATGGACA CCAGAGTTTC AAGCAATTTT CATCCAGAAG GTCACATGTT 001600 001601 AGGGGTAAAA GCTATATGGA ATCTTGAACA AGCATAGCAT CTAATAGCCT TATTTGATTA AAAAAATGAA TACACACAAA 001680 001681 AATTTTTTGA AGACTAACTA CCCCTTAGAA ATGTTCGTTA ACTTGGTCAG TCATATAAGC CTACCTCCCA TTTATTCAAT 001760 001761 AGATCAGGTA ACTCCCCTCT TTGTTATGAG CCCAGTTTTC TAGAGGTGGA CCAGATTCCA TCATATGTAC ATCACTCTGC 001840 001841 TAGTTGAGCT CTCTAAATGA AAACTTCAGC CGTAGCCACT GGATAGAAGA ATACAAGAAG GAATGCCAAC TTGAGGAGCA 001920 001921 AGTTGTGTTG AGTTCAGGCA TTGCTTTGGA GAATCTGCTT CTTCACCTGC TGGCTTACAG GGTTGGATGA CCTGAGGCAG 002000 002001 CAGCAGAAGT TTAGACAATT ACGGTTGGAT GATTCTTAAC TGTCCTAATC CCAAGTCCTC AATTTATAAG TGAGGAACTG 002080 002081 GAAAATCATT CACACAGCTA GCTGCAAGCA ATGACAGCCT TGGAGAGAAA TCAACCTGTG TACAGCTCAG TCCCATCTGA 002160 002161 GTTCTTTGGA GAACAAACTC CAGCAGCTAC TTCTAGAAAA TATAGACAGC ATATTCAGCC AATCTCCTGA GCTGGTGGGA 002240 002241 CATTTTTACA TGAACAAGGC CTCCCTCCAC ATGAATTGCA AAGATTCAGT GGACTTTGCA TGATTATTCT TCTAATCTTA 002320 002321 CATTAAGCTT TATTTTGGAT TTTAAAAAAA TCTGCCACGT GTAAGGGCAC CAATGTCCAC CAATATTGTT ATATAAAATA 002400 002401 ACATTATTAA TCCTTCCTGT TTATCTTTTA ATCAGAACTA AGAGGGATGG TGGATGATGA ATGCATGAGT CATACTTACT 002480 002481 TCATGATTCT ATAAATCCTA ATTTTCACTT TTTTAAAATA AAAATTGCAT GCAAACCAAA AAGAAGCTGC CTAAAACAGA 002560 002561 CGTGGAGATA CTCTACTTAG GTTTCCCAGG GAAAGACAAT TTTAAAAAAC AATTTTAGCA ACAAAAATAC ATGGGCAGGG 002640 002641 AATACACGCA TTTATTATCA TTTTTCCTCT TAAAGCAGCT ATGATGAGAC ACGTCCAAAA CACCTGCTCT TGTGTACTGC 002720 002721 CCAGTTTCAC GTGAGTTCTG TGGGATAACA CTGAATCCAC TCTTCAACTA CAGTGAGGAA GTGATAGAAC TGCTTCTGGC 002800 002801 ACACCAAAGA ACAGCACAGA GGTCCAAATA CATCTTCCTT AGGTGCCCAT GAATTTAAAT TTATTTCTGC TTTATCCTTT 002880 002881 AAAAAAAAAT CTAACGATTT CAAATGCCTT GCTGAAATCA ACACCCTCTG CAACAGCCCT CTCAGGATAG TTCATCCTAG 002960 002961 TAGGTCTGTC AAAACTGAAA CACCAACATG TGAGTTCCTC CTCTGGGTTT TAAATGTTAG TACTGTGACT ACTTCTTTGT 003040 003041 TTGTTTTCAC TTTTAATTGA CAAATAATAA CTGTATATGT TATACAGTAA ATCTGACGTT TTGATAT |
Predicted Small Protein
Name | NONHSAT100187_smProtein_437:631 |
Length | 65 |
Molecular weight | 7034.881 |
Aromaticity | 0.03125 |
Instability index | 71.740625 |
Isoelectric point | 6.81610107422 |
Runs | 10 |
Runs residual | 0.00765625 |
Runs probability | 0.0435170464582 |
Amino acid sequence | MARDIGNNFVKVTETHSLLSPMSPTWQEDICHHVRRVLLSEALTSPASSAVREVGSSSLS QTLR |
Secondary structure | LLLLLLLLEEEEEELLLLLLLLLLLHHHHHHHHHHEEEHHHHLLLLLLHHHEEELLLLLL LLLL |
PRMN | - |
PiMo | - |