NONHSAT099878
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099878 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1702 nt |
Genomic location |
chr5+:469926..472762 |
Exon number |
2 |
Exons |
469926..470102,471238..472762 |
Genome context |
|
Sequence |
000001 GACTTCTTGA AAGAATCAAA ACTTGAGAAG TAACTGAGAA GTAGAAGCAG CTCTTAACAA GCATCAGGGG CTCAGAAGAG 000080
000081 GTAGCTCTTC CCAGGGCATC CAGCGGGCGA GCTGTTCCAT GTGCCTCTGA ACCCAGCTTC CCACTTAGCA GCAGGTCTTG 000160 000161 AGTGCAcctg gcatacaAAC ACCTGCCTGC CCACCCCCGG TGCTGAAGAC CGACCAGTCA AGGAGGTGTT GGTGGGAGTG 000240 000241 TTGTGTTCAC CATGTGGAGA TCAGGCGGCG ATTACCGCAT CTTCTTTGCT GACTTTGGTA ACCGGGTGTC CAGGGAGGAG 000320 000321 CGATCGGGAG TGGCCAAGCA GTTGCCTGGA CTCAGCTTCT GACTCTGCAG CTGGGAGTCA GATGCAGGCC CAAGGGTCCA 000400 000401 GGGGAGTTGT TCAGCGCCTG GAATCGCCAT GCATTGCGCG GTGGACCGCA CGACGCTCCT GCTCTGTTCT CCCAGGCACA 000480 000481 GACAGGCACT TGGAAGGCAG CTTTGCTCCT CTGGCCACCC GGAAACCTCC CAGCAGTTCA GATGGGACAA ACTGGGGGCC 000560 000561 TGTCAGAACA GCCACTTGTG CCGGGAAGGC CAGGCCCCGG CCTGCTCCGA TGAACGTCAG GACGGTGGCT GCAGCAGGGA 000640 000641 ACCAGGGCTG GCCTTGGATC TGTCCAGTAG GGTCACTGAC TGGGCAGGGC TTGCTGCATA GAGGATGGCT GCATTTTGTG 000720 000721 CTCAGAGTTG GTTGAAATGG CTACGAAGTG TGGAGAATAA CCACTGAATC CCAAAAAGTC ACTGCGCTTG ATCTGATCCA 000800 000801 AGTAACAGTG ACTGCAGTTA GGGTCGAGAG CTTCTCCGAA GCAGCGGTCA TGCAGGCTTT TGTGTGGCTG ACGCTTCCCT 000880 000881 TTTTCACAAC AGTAAAAAGC TATCAATGGG AAATTGTGGA CTTTTCCCAC CAGGGACTCA ATGGGGACTC AATGTGCAAT 000960 000961 ATTCAGTCAA CATAAAACTC TTTAAGAACT CCTCCTGACT GGTGACTGTC AACACTTGAT CTGAAACGTG AATAGTTTAA 001040 001041 TTTTCCTGAG CAAGGAGCTG CGAGTCTAGC TTTAGAAAAG CCCCTAGGAG TGTCCACCTC CACCACTTCC ACCGTGCAGG 001120 001121 CAGGTTTCAG GTGGGTTGGA CCCTGTGGGA CTTGCCGTCT GAGGGATGGA TGGACTCCGA GCACCCTCCC CGGCTCAGCA 001200 001201 CCCGCGGCCT CCGCCCACTC AATGGACTGT GCCTCCCAGA GCTTGGGCTG GATGGTCTCC CTGCAGAGGA CCAGGAGCTC 001280 001281 TGTCCAAGGC CTCGCCCTGG GACGCTGGAA GGGGTGGGAA GGGTCAGGGG TCCGGGGTCT AGGACAGGCT CAGGGGTCTC 001360 001361 AGCAGGTTCT CCTTGGAGGG CCTGAGCCTG GTAGGGGGGC GGTGCCCTGG GCCCCTCCAT GCCCCCTGGT TTGTTAAGGG 001440 001441 GGACAGAGCA GCTGCTGGGC CCCACCATCC ACTTAAGGAC TGGCCGTGAT TCTTGGCAAG CTCCGCCCGC CAGGCCACCT 001520 001521 CTCACCCAGC CAGGGCACCC CGGGCGACCT CCGCGCCAGG TGCGACAGCT CAGGCCGGAG ACCTCGTCTG TGGGGACGGG 001600 001601 CCGTGTCCGG GGCCGCCACC CTGAGACCGG GCGCGGGCAG GACGGAACCT GGGGGGGAAA CGGGGCAGGT ACTGGCTTTA 001680 001681 GGAGTCTAAA TCCCCAAACG CT |
Predicted Small Protein
Name | NONHSAT099878_smProtein_428:700 |
Length | 91 |
Molecular weight | 9806.8726 |
Aromaticity | 0.0333333333333 |
Instability index | 59.7422222222 |
Isoelectric point | 6.87188720703 |
Runs | 9 |
Runs residual | 0.0398589065256 |
Runs probability | 0.0475966162241 |
Amino acid sequence | MHCAVDRTTLLLCSPRHRQALGRQLCSSGHPETSQQFRWDKLGACQNSHLCREGQAPACS DERQDGGCSREPGLALDLSSRVTDWAGLAA |
Secondary structure | LLEEEEEEEEEELLLHHHHHHHHHHHLLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLHHHHHLLL |
PRMN | - |
PiMo | - |