NONHSAT099003
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT099003 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
3353 nt |
Genomic location |
chr4-:159587827..159593407 |
Exon number |
2 |
Exons |
159587827..159590920,159593149..159593407 |
Genome context |
|
Sequence |
000001 ATGACGCAAC GGCCAGCCGA GGCTTCCGGG TCATGTACCA AACCAGGGAA AGATAAGGGA CTCCAAGTCC CAGCCGGGGA 000080
000081 GCGGTGAAAC AGCCACAGCG CGGCCAGAGG GGTCCGCGAA TCCCACAGCA CGACGCACGC GCAGTGAAAG GCAGTAGAAG 000160 000161 GCGGGGCGAC GCACACGGCT TCCTGGGAGG TGTAGTTTTC TCTACGAGTG CCCTTCGAGA TCGATTGGAG GCTCGCGCAG 000240 000241 GAGCCGTGAG TTGCCTAAGG CAGCCTTTTC ATTAACCAAA CTTCTTGAAG CCACATCTGC AGTATCAGCT CAAGTGGAAG 000320 000321 AACTTGCCTT CAAATGTACA GAAAATGCAC GTTTCCTTAA AACGTGGCGG GACCTCTTGA AAGAAGGCTA TGATTCTTTG 000400 000401 AAACCTGATG ACTGATTTGG CATACTTCGT TGTTTAATAA TGACTGCAAT AATTCATACT TCTTATGTCA TATTTTGTAC 000480 000481 ATGTACCACA CATATAGGAT GACCTCTGTC CAGCAGTTCT GTATATACTC AGAATGAAAT TTTTCTTGGT TTTCTTGGTT 000560 000561 TTTGTGAAAG CAGAATACCG ATGCTATTTT TGTTGCGGAC CAGTACTTGT TTGTCCTTAA ATACTTTATG CCTCTGAACT 000640 000641 TTCATAGAAT CCTTTATGAA AGTTAACTTC ATCAATAGAC GGTTAATATT AATAGAGCCA CAGTGCTACC AGTAGCAAAC 000720 000721 TAGGTAGACC ATTATTTGTT TTGCAACAAG ATGCTAAGCA TGGCAGACTT TGAAGTTGCG TTTCATCTTA AGGACCAAGG 000800 000801 GAGGTAACTT TAAGGTTGCC AGTGGTGGAT CCAGctccgt taggctaagt tgtctacagc taatgattgt gtctttattc 000880 000881 tatatcccca gcacctaaaa cagggtcaca caacattcac taaatgtttg ttgaataaaa gagtTAACAA ACATAATTGA 000960 000961 AAGCTTTTTT TCTTCCTATA TTTAGCATGA AGACTGTCAT TGTTTCTCTA GGAAATGTAT GAATCTGAAC TTTTTTGACT 001040 001041 TGAAGAAAAA CATTCTTTTT TTACAGAGAT TTGGACTTTG ATGATAGGtt ttaaaaatat atgataaata ttttttGTAC 001120 001121 TTGTTTGATT TTTTTTTTAA AGACTTTACT TCAGAAAGGG AAAGACTGTT TAGAAAGAAT GCATATTTTT TCCCTATTTA 001200 001201 TTTCTGTGGT TACTGCTTTT GCAGTTTAAC AGTGTTTGTA TTTGATATTT GTATATGTTT GATTGCTATC TTTAAAGTGC 001280 001281 CTTATCAGAT TTATGGCTCT GTGCTATTAC TTTTTGAGCT TTGCAAGTTG TGTACATAAT AATTCTAAAG AAGTTACTTT 001360 001361 GTTTGCAATG CATCAAATTT AAATGATGTG ATTTTTTTTG TATTATTTGA TCTTAGTGAC AGTGTTCTAT TTTGCATCCT 001440 001441 GTATCTTATG TTGCTTTTGG TGTTTTGTGT TGTGTGTCAA CGATTAAGCC AACTAATTCT CTACCATATA TAACTTCTGG 001520 001521 ACATTTTTGA TACAACATCT TAATTCTTTG TAGATATGGA GATAGGTACA GAACTATATT CTAATGCCCC ACAATGGGGC 001600 001601 TATGAGAGGG GACAGATGGA TGGGCAAAGA ATAGTTTTGT TTAACATATT AGGTCATAGT TCTTGATTAG TTTTTTTAGT 001680 001681 TAAAGATAAA CACATAGGGT GTGATTTCTA TACCAAAGAT ATGCTTATTT CAGTATTAGA AAAATATTCT TCTTACATCT 001760 001761 CCTGAAAATT GCaattttta aaatgtgtaa aaataaatta ttattaaaaG CACATTTTAT TTCCATTTGT TTGGATTCAT 001840 001841 TACCTTAAAA CTTTATTGAC ATATTTCAAA GATATAGGAA AGGTAAATGA TTTCAAGAAA ATCCGTGTAT TTCTACCATG 001920 001921 CAGATGTAAT AAATGTTAGC ATTTGGCTAT ATTTTCTTCA GACACACATA TGCATGTAAT TGCAAATGTT agatacattt 002000 002001 gaagtttgct ttgttacctg tttgatcctg tcccgttcct ccctccccag agtccccaga ggtaaccact agagggggca 002080 002081 taatatagca tgtgttttta tatttttaat acaaatatat TTTTTAAAAG CGCTACAAAA TATTGTTTTA TATAtgtggt 002160 002161 agccagcttc cagatggccc cagtgatccc tggcctcctg gtgttcatgc cccagtatag ccttctcctg cattttacag 002240 002241 tgctgacttt tgtaactacc aggatattga gcaaatgcag tgtgtgattt ctgaggcCAT ATCttttact cttttttttt 002320 002321 tttttaagag acaagatctc actctattgc tcaggctgga gtgtggtggc aggatcatag ctcactgtaa ccttaaactt 002400 002401 ggactcaaac aatcctccca tctcgcctcc tcctataaag cactgggatt acaggcATTT TTGCTCATTT TTCTATGTTG 002480 002481 TTTTTTTTAC TTGTCAGTTT TTAGATATTA CATATTTTGA ATACTAATGA TCTGTTATGT ATGTTCCAAT TATCTTTTTT 002560 002561 AGTCTGGTTT GTCTTCATAT TTTGGTTATG AAATCTTGAA TTTTTAAAAA CGTAATTTTA CCAATCTTTC ATAatgattt 002640 002641 gctttttctg gtttttgtat aggaaatgtc ataaaaatag tcctattcag ccttccaaaa gttacaaaat ttttgttttt 002720 002721 aacatttaga tgtttagtcc aactgaaatt tgttttcttt tatggcatga ttttggaatc ttgttttaat tatttttaca 002800 002801 tatttatagc tgttcctcca agtatcaatt tttcaaGTGC AACATCTGTC ATGCAGTTAC TATGTAAGGG CCAGATTCTG 002880 002881 ACCTTTCTGT TCTTTTTATC tgaaggaaat ttgaacatgc cacccccaaa tatgccgatt tggcatactg attatttcga 002960 002961 gctaaaggtg cttgactaac agtagttgca gaaatggcta ttttaactgt cctttcctac ctgtagcaag ccatacaaac 003040 003041 ttctttgata aagatgcttt cctgatacca agatgagaag atggctctaa tcagctgaga cagcaccaga ggaatctaca 003120 003121 aacaagaaac tattagtttc ttaacatata tttaccttcc acagtttctg cctctggaag cctaaaactg ctttccttcg 003200 003201 tcttgtcaca cttctctgaa atgtattctt tgtggaagat gctatatagt ccagagttgt aagccactac ttgtgtttac 003280 003281 cttttcattg agttttctcc tgtgtgatgt acgttgcata tattaataaa attacttgtt tttctcttgt taa |
Predicted Small Protein
Name | NONHSAT099003_smProtein_1100:1228 |
Length | 43 |
Molecular weight | 4855.9539 |
Aromaticity | 0.142857142857 |
Instability index | 60.9333333333 |
Isoelectric point | 8.63287353516 |
Runs | 6 |
Runs residual | 0.0333031946956 |
Runs probability | 0.00292939998823 |
Amino acid sequence | MINIFCTCLIFFLKTLLQKGKDCLERMHIFSLFISVVTAFAV |
Secondary structure | LLLHHHHHHHHHHHHHHHHLHHHHHHHHHHHHHHHHHHHEEL |
PRMN | - |
PiMo | - |