NONHSAT098306
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT098306 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3425 nt |
Genomic location |
chr4+:131729666..131733073 |
Exon number |
1 |
Exons |
131729666..131733073 |
Genome context |
|
Sequence |
000001 CATAGTTTAT AGTACACAAG GTGGCTCGAG TATCCACCAT GATTGTATAC AATTCCCCTT TTATCCTAGG CATGGTTTAT 000080
000081 TTATGTTTAT TGAAGGGTAT TACAGGAGGC AATTTATTTC AGAATCCCTT GGAGCCTAAT CAATGTTGAT AAGCATCATG 000160 000161 ACAGCTAAAA AGAATCTCTT TTGTTCCCTC TAGTGGTGAA ACACTGCAGT CCAAAGGGAG GTTTATTGGT GGACAATCTC 000240 000241 ATATTTAGTG TCTTCGTTGT TTACAGTAAA GGCAGAAATC TCAGGGTAAA GAATCTTGGT TTTAGGACCT CTGATTATGA 000320 000321 CTTAAAATAA GAACAAGAAG GTCTCTTTGG TCCCAGCCTC TACGACTATT GTAATTACAG AGACATAGCT TGTTAACCTT 000400 000401 TTGAGTTTTT CTTGCTCCTG AGTTCTCTCA AAATGTTTAG CTAAGGTCAC AAATTGAGTC ATATCTGTAA CTTTCTGTCT 000480 000481 CAATTAATAC ATTTTAATTT AACTGTAACA TTTAGTTTAA TTAAACTGTT AAGTCCATTT AAAAATGCTC ATGTCATTTT 000560 000561 AATCCATACA GGAAATCCTC TGTTTCATAT TTTGAGTGCA GCATGTTTTA CAAACAGTGT TTCTAAGCAA ATTCTGTAAT 000640 000641 CTGAAACTGG TTTATTCTTT TTTATTCAGA AGGTTGTATT ATGGACCAAT CAAAATTTAT GGAAGTCTTT TAGAATTGAA 000720 000721 TTTAAAAGGT TTTTAATACT TTTTTAAGCT CTTTTTGTTA CTTTTTATGA GGAGGTTTTA AAGTCAGGGA GTTTTGAATC 000800 000801 ATAAGCTCAT ATGAGAATTT CAAATTCCTC AGTAAATATT TGAGGACTTT TTCTTGGATC GGGGAAGTTT TTTTACAATG 000880 000881 GCTCTAAGCT CAGTTCCAGA TCTTGGAGTG TAAGTAATTA CAGCAAGAAT ACTTGGCTGA TCAAAAGGTC TTACTTTGCA 000960 000961 AGGCATCTGT CTTATTTAAC TTTTAAAATA TTATCCTTAA GGTGGCAGGT AATTTAGCAA AAATATTAGT GGACTCAGAG 001040 001041 TATGTAGGCA GAGATGAATA AAGAAAAGGA ACAGTTAGGT TTAGTTTAGT CAGAATACAG TCCTCATTTA TAATGTCTAG 001120 001121 TCTGTTGCTT AAGCTTTTTG TTTGTTTTTT GCAAACAATC TATAGAGGTG GCAATTTTCA ATCTGCTTAG TCTTTTATAA 001200 001201 GCCTTGTATA CCAATTGAAG ACTAATCCCA TTGTTTTGTA GGGTTTTTGA TCCCCATTTT TCTAATAGCC TCAGAAATAA 001280 001281 ACAATTGTAT TCTCTAGGGT ACATCTGTTA TTCATATTCA CCACAATGAA AAGAAACCTG GTAATGAAAC CATCAATCAA 001360 001361 TAAATTCCCA CTTTTCCTCT ACACCTCTGT AGTCTCTTCT CTTCACCCTT CCTTCACTCT AGATCATAAG TGAGAGCTAG 001440 001441 ATCATAAAGA ACAAAACACT GCAAAAAAAA AAAAAGCATA AAATGAAAAG CACAAAAACA AGACAAATCT ATTTTAATGG 001520 001521 GCAAGAGGTG ATAGTGTGTG AAGGCTAGAG ACACTAATAA ATGTATCATG CTAAGGAATA TAATCTTATC TACCAGTTTA 001600 001601 TGAGCATCTG CTATAATATC TTCTGTATAA ACATACTCTT CTCCAGTCTA TATGACAATT CGGTAAAATG TCTATTATTA 001680 001681 TGTCTACCTC AAAGATTAAG AAATTGAATT CTATTGAAGT GACAAATCTA GATTTATTCT TAATTCTCAT TGCTTCACCA 001760 001761 AACTACAATC TTTCTACTAT GCCACATGTA ACCTTTATGT GCTAATGAGT TTTGAATTTC ACCCTAAAGT CAGAAGAAGA 001840 001841 TTTTAACTTT GTAATAATAT GATCAAATTT GTAGGTTTTT GTGGATAAAA TATAGCCAAG TAGAAGAAAT ATAAAGACCT 001920 001921 CGGGAAAGAA GAATATAATT ACAGAAAGGT TTATAACTTC TAAAAAGAAA AAAGTAATTG TCTTGTATGT TAGGCTCAGC 002000 002001 CAGAATTTAG ACCATAAACG CGTATCTTCG AAAACATCAC TACACTGCTA AAGGCCACAT TTAAAGACGT GGATAATCAT 002080 002081 AATTATGAAT TATTATACCA GAGCATATTA TGCAATAATG AAGATATTTG CAGCTTATTC CTGTAACCCT GGCTACTGAG 002160 002161 GAGACTGACA CAGGAAGATC ACTTAAGGCA GGAGTTCAAG ACTAGCCTGG ACAACACAGT GAAGCCCAGT CGCTAAAAAT 002240 002241 ATAAGAGGAA ATTTAAAAAT TAGGTGGGCA TAGTGGCTAA ATCCCATCTA CTTGAGAAGC TGAGACAGGA AGATCCCTTG 002320 002321 AGCCTGAGTG GTAAAGGCTG CAGTGAGCTA TGATCACACC ACTGCACAGC AGCCTAGGCA ACAGAGCAAA GCCCTGTCTC 002400 002401 AAAAAACAAA TTACTTTCTA TTTTATTTAG AAAAATAGAA ATAAAGAGAT CAGTGCCTTT GAAAATATTT GACTTTGAAT 002480 002481 CAGTAGCTTG GGGTAAATAT GTGTTTAGTA TTAAGTTCAG ATCAAATCTG CTGATGTTCT AAATGTTCAA ATATTCAGAT 002560 002561 TTCTTATTTC AGTATTTTAC TGGCCAGAAA GTAGTAGATT CAGAGTTTTG TAATAATATT TAACCAACAC AGAATAAACA 002640 002641 TTAAACATGA GAACTTCCTA AATTGATATT AAAAGCCAGA TTTGTCTATC AGAGTGAACA TACAAATGAT AAGTAAGAAT 002720 002721 ATTATGTTTA TATTTGTAAA CCCCTGAAAC TGTCACCAAA TTTAGATGCA ACAATTGGTG TTTTGTTGAT CCTTTAATAT 002800 002801 GTAAGTTAAA TATAACGTAT GATATAGTTT TATCTCATTT TCTATATTTA AAACTGAGAA ATTATTCTGC AAAGCATATT 002880 002881 CATATTTTAA TGTTTTCCCA AATTTCACTG GTCTAATGAT ATTTTTTCAT CTGTTTTTTC ACAATCAATG AATATCACAT 002960 002961 TTTAAAAATC CCTAGCCAAA TCAATGTTCC CTCAAGAAGC CAACTCTGTG ATATTTCTCA ACTCATCATT CTCATTTTTG 003040 003041 AATAACAAAA TCTTAATTTT GCCATTGTAA TATAAAGTAA GCAATGTGGT GAATTCATAA AGGAAAAAAA TCTTGCAATA 003120 003121 AAAGGCCGGA GTTCAAGTTA TAGTTGACAT TTACAGAACT TGGAAAAATA TAAATAAAAA TATAAAACCG ACTTTTAATA 003200 003201 TTCTTTATGA GTGATTGTCT CTCTGAGTTG TGGTGAAGTG TAAATAAACT AAGCAAAGAA ATTTTGTTAA TCATAGCAGA 003280 003281 TGATAAAAAT ATTAACAGCT ACTACTATGT TGATTCGGCA CTTTGTGGTT ACTTATTCAA TATTTAAATT TATTCATTTT 003360 003361 TAAAATGTAT GAGTCCTTTT GTTTGTTAAT AAAAGACCAT GAGATTTTCA AAAAAAAAAA AAAAA |
Predicted Small Protein
Name | NONHSAT098306_smProtein_1667:1804 |
Length | 46 |
Molecular weight | 5074.0719 |
Aromaticity | 0.0666666666667 |
Instability index | 52.8488888889 |
Isoelectric point | 7.93927001953 |
Runs | 12 |
Runs residual | 0.104419191919 |
Runs probability | 0.0354619325209 |
Amino acid sequence | MSIIMSTSKIKKLNSIEVTNLDLFLILIASPNYNLSTMPHVTFMC |
Secondary structure | LLEEELLHHHLLLLLEEELLHHHHHEEEELLLLLLLLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooo |