NONHSAT098298
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT098298 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1772 nt |
Genomic location |
chr4+:130701165..130876523 |
Exon number |
16 |
Exons |
130701165..130701254,130724147..130724270,130728159..130728303,130733157..130733220,130733817..130733915,130734829..130734940,130746495..130746607,130755365..130755479,130758526..130758580,130783723..130783923,130821693..130821809,130829789..130829858,130870232..130870292,130874429..130874494,130875533..130875731,130876407..130876523 |
Genome context |
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Sequence |
000001 GATGCACTCC TAAGAGAAGA CTACCTGAAA GGAGTGTACA CTGGTCTAGC AGTTGAGATC AGCTAGTGTT CCATCTATCT 000080
000081 TCTGTCATGT GGAGGAGTTC TTGCTCTGTC ACCTAGTCTG GAATGCAAGG GCACAATCAT AGCTCACTGC AGCCTCATAC 000160 000161 TCCTGGACTC AAATGATCCT CCTGCCTCAC CCTCCTGAGT AGTTGGGACT ACAGGCTATA CTGGTTATTG TGGATCCAAA 000240 000241 AATCCTAGGA CACAGACTTT GCCCTCAAAT TATTTACTGC ATAGTGGGTG GCCTGAAAAG CAAACATAAG CACTAAATAT 000320 000321 GGAAAAATGC AAAAGGCAAT GGGACCATAA AAGGAACAGA TCTCTTCTAA GATGTCTTGA TCGACTGACC CCAAAGCCAG 000400 000401 AGGGTACCAG GTCAAAAAGC AAGAAAACAA ACAATACTGA CATTAGAGAG AAGCAAAGTT TCTATAGAAA ACCTATTACA 000480 000481 CTGTGGTATA AATCAAGATG AACCTGCAGA CATCTATTTT AGTTTGGAAG TCTGGAAAAG TTCAAGATTG GCCATCTGCA 000560 000561 GCTGGTGAGA GCCTCAGGCT GCTTCCCCTC ATGGTGGAAG GTGAAGGGGA GCTGGTGTGT GCAGAGATTA CATGCTTTTC 000640 000641 TAGGTCATCA TTCTAGGCTT TGTTGAAGCA TGCATTTTTG GCATGAGGGT GGCAGCCTTT GCACTATGTG CATGGCTGAG 000720 000721 GAGTTAGGAT CTGGAGGGTG ATGAAAGCAA AGGTGCTGCT GGTTACTCTT GGTTCATCTA GCAATAGATG ATCTGAATGT 000800 000801 TAGAGTTCGC CAAATATTGT TCCTGGGCAG TCTTTGCTCT ACCAAATCAA CTTTCTCCAT GGGGGAGCTA GAAGTCACCC 000880 000881 CACATTCTCC GCCATGGCCA GCTCTACATT CTAAGAGAAC CAATGGCTCT ACCCAACATA TTCTTCTCAC CACAGATGAC 000960 000961 AAAGACACAA GGAGCCAAGA CAGATCATTC AAGCATATTC ATTGCCTCTA TCTTCATCCC ATTAAATAAC ATCCCGCCAA 001040 001041 CCAAAGCAAG TTATCTGCAT AAGAATAAAT ATTCCACCTA CTCTACTGCA AGGCCCTGCA AGAGTCATGA GACAAAAGGA 001120 001121 TCCTCTGTGG ACAGCACCCA AGATGGAAAC AACTGACAGT CTATGGCCAG GGCTATACTC TGGTGAAACT GAAAGGTCTG 001200 001201 CATGGAAGTG TCTGACTACC ACCATCCACT CAGGCAAATG CATTTGTTTC CCTCTATTCA TTATTAGAAG AGAGGAGATT 001280 001281 ACATACCAGA CATATACCAA TAGGTTTTCT CTTCATAATA CCTACGTCAT CTAGTAGCAT AACATAAGGC AGAATCCTTC 001360 001361 AAAGATTTTC ACCTGAACTT TTCTTGAGCA TCTCTAGACA GTCACATGCA GAATAACAAC TGGGTTTTAG GTGTACCAAG 001440 001441 TTCTTAGTAT GGAAAAAAGA TATCCTACAA AATTTTGTCT CTACACATGT TGAAGTTCAT CTCTCACCCC TCTCTACTCT 001520 001521 CTTACTTATG CTTCAAGCAA ATGGAATTAC TTTTTTTCAT ACTGAGACAT TAAAACAGGA AATCCTTCTT CCTAGGACTC 001600 001601 CTGTTCACCA CCACTACCTC TACACATAGC AGATCCACGT AAGACACTTG CATCCAAGAC AAGTCAGAAT GATTACATAT 001680 001681 GAAAGTTTTA ATTGCACTGT ATGGGGATAT TGCTGTGTTG TGAATTAAAT AAGAATTCAT ATTTTCAAAA AAAAAAAAAA 001760 001761 AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT098298_smProtein_1106:1333 |
Length | 76 |
Molecular weight | 8877.1067 |
Aromaticity | 0.133333333333 |
Instability index | 51.7346666667 |
Isoelectric point | 8.53582763672 |
Runs | 12 |
Runs residual | 0.0110638297872 |
Runs probability | 0.0289922275217 |
Amino acid sequence | MRQKDPLWTAPKMETTDSLWPGLYSGETERSAWKCLTTTIHSGKCICFPLFIIRREEITY QTYTNRFSLHNTYVI |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHEEEELLLEEEEELEEEEEEEEEEE EEEELEEEEELEEEL |
PRMN | - |
PiMo | - |