NONHSAT097617
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097617 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1513 nt |
Genomic location |
chr4+:103817882..103819394 |
Exon number |
1 |
Exons |
103817882..103819394 |
Genome context |
|
Sequence |
000001 ctctatcaCT TTCACATTAG GTGCTTTGTG GTGAAAATGG TTTCAAGGGT GATGGCATTG TACATATTGA GACACAGAAG 000080
000081 CAGCTGAAAG TTCTATTAAA AAATGAAATG GATGCTTCTA AATGACAGCA AAGTCTTTGT TGGATTAAGT CTTGTAAACA 000160 000161 ATGAGAAGCA GAACTCAGAG TTAAAAAGTT CACCAATGTT TACAGGAAGA TTTTTGGAGA AGACATGGAT GGTAGGTGCC 000240 000241 TTAAAGATCT CTTTGGCAAG TTGGGATCTG TCTTAAGTGT GAAAGTAGTG GTTAATGAAA GTGGAAAACC CAAAGGTTTT 000320 000321 GGATTTGTCA GCTTTGAAAG GCATAAAGAT GCGCAGATGA GATGAACAGA AAGAAGCTCA ATGGAAAACA AATTGATGTT 000400 000401 GGTCAAGCTC AGAAAGAAGT AGAATGGCAG ATGGAACTTG TGTGCAAATT TGAAAAGATC AAGCAGTATA GGATCACCAG 000480 000481 ATAACAAAGT GTTAACATTT ATGCAAAAAA TCTTGATGGT ATTGATGAAT GTCTCTGGAA AGAACTTTCT CCACTTGGTA 000560 000561 CAATCACTAA TGCAAAGGTT ATGAAGGATG GTTGTCACAA CAAAGGGTTT GATTTGTGTA TGTTTCTCCT CTCCAGAGGA 000640 000641 AGCAACTAAA GCACTTTCAG AAATGAATGG TAGAATTGTG GGCACTGAGC CATTGTATAT AGCATTAACT CCATGGGAAG 000720 000721 AAGAGCAATG AAGAGCACCA GGCTCAGCTC ATTAACCAGT ACAGTATGTG CAAAGAATGG CAAGTGTAAA AACTATGCTC 000800 000801 AACCTGGGAA TCAGCCTCTA TCAGCCAGCA CCTTCTTCAA TTTACTTCAT GGTAGTTATC CCACAGACTG ACAGCCATGC 000880 000881 TGCAAAGTAT TCTCCTAGCC AAACTGCTCA ACTAAGATCA AATCCTCCCT AAATTGCTCA GGGTGCCAGA CCTCATCCAT 000960 000961 TGAAAAATAT GCCCAAGCCA CTCCTAGCTC ACTACATTTA GTAGTAAGAG ACCAGCTTCT TCACAGCTTC CACGAGTCAT 001040 001041 GTCAACACAG CTGTTGTAAC ACATCAACAC AGACAATAGG AGCACATTCT GCAGTTGCCG CTACTGCTAC TACAGATACT 001120 001121 CCTGCTGTTT GCACCATTTC ACAGTATAAA TATGCTATGG AAGTTCACAA TCCTCAATGG CAGTTTCATG CACAGCCCCA 001200 001201 AGTTACCGTG CAGCAGCCTG CTGTTCATGT AGAAGGTCAA GAACCTTTGA CTTCCATGAT GGCATCTGCT CCTCCTCAAA 001280 001281 AGCAAAAGCA AACGAGTGAA TGGCTCTTTC CTCTTCTTCA AGCCATGCCC TAGTCGTGCT GGTAAAATCA TTGGCATGTT 001360 001361 GTTGGAGATT GGTTATTTAG AACTTCTTCA TATGCTTGAA TCTCCAGAGC CTCGCTGTAC TAAGGTTGAC AAAGGTATAG 001440 001441 CTGTACCACA AGACCACCAA GCTAAAGAGG CTGCCCAGAA AGCAGTTAAT GGTGCCACTG GTGTTCCAAT TAT |
Predicted Small Protein
Name | NONHSAT097617_smProtein_776:931 |
Length | 52 |
Molecular weight | 5538.334 |
Aromaticity | 0.078431372549 |
Instability index | 67.637254902 |
Isoelectric point | 9.39898681641 |
Runs | 9 |
Runs residual | 0.0222286934576 |
Runs probability | 0.0337985043868 |
Amino acid sequence | MASVKTMLNLGISLYQPAPSSIYFMVVIPQTDSHAAKYSPSQTAQLRSNPP |
Secondary structure | LLLHHHHHHLLLEEELLLLLEEEEEEEELLLLLLLLLLLLLLLEEEELLLL |
PRMN | - |
PiMo | - |