NONHSAT097544
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT097544 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1843 nt |
Genomic location |
chr4-:100869243..100871512 |
Exon number |
2 |
Exons |
100869243..100870897,100871325..100871512 |
Genome context |
|
Sequence |
000001 ATTGGTGGGA TGAGCAATCC GAGTTCCCGG ATGAGGGAAC ATTCTGCAGT ATAAAGGGAG CAGGGAAGGC GGGAGACAGC 000080
000081 GCAGTTTGAA TCGCGGTGCG ACGAAGGAGT AGGTGGTGGG ATCTCACCGT GGGTCCGATT AGCCTTTTCT CTGCCTTGCT 000160 000161 TGCTTGAGCT TCAGCGGAAT TCGAAATGGC TGGCGGTAAG GCTGGAAAGG ACTCCGGAAA GGCCAAGACA AAGGCGGTTT 000240 000241 CCCGCTCGCA GAGAGCCGGC TTGCAGGTCA GTAGTTGTTC GTGCAGTCTG GGAGTCATGA TGTTTTTCTT TGCATTTCCT 000320 000321 TTTTTGTTAT TCATCGCTCT CGATGGGCGT TTTGTGTATG CGTGGGTGAT GCGGTGTCGC GACTTGGGCT GCCCATACGA 000400 000401 TAAATATGGG GGGGAGGAAT CACGTGTTTC GATGTCGGGA CGCGTTGCTG CGCCCGTGCC CCTTGCTTTG GCGCGCATAT 000480 000481 AATTTCCCCA TCTCTAGTTC TCATTTTTGT GCATTTATGT TTGTGTATGC TTAAAATTTA AGTTCCCAGT GGGCCGTATT 000560 000561 CATCGACACC TAAAATCTAG GACGACCAGT CATGGACGTG TGGGCGCGAC TGCCGCTGTG TACAGCGCAG CCATCCTGGA 000640 000641 GTACCTCACC GCAGAGGTAA ATGGGTGAAC GCCTATAATC CGGAGAAGGT TTGGGGGGCG GGGAGGCGGC AAGAGGGAAG 000720 000721 GAGGAAAGTG ATGCAAGAAA ACTCCCAGGC CCTGAACGCG GCGAGAGGCC TAAGAGAACG CTAGAGGGAG CTGGTGTTCA 000800 000801 ACAAGGATCC TACTGAGCTT GAGTTCTCTG CTCTTGGAAT TAAAATTGCG TGCCCCCTGT ATATCTTGCC AGTCAGATAG 000880 000881 TGAGGAACGA TTCCAGTTGG TAGATCTGCG TTTGTGAGGG TTTTATTCTG TTCTCTGAAT CTTGGCCAAA GGAAAGTTGG 000960 000961 AAGGCAACTG ACAGATTCTG CCTTTTAGGT ACTTGAACTG GCAGGAAATG CATCAAAAGA CTTAAAGGTA AAGCGTATTA 001040 001041 CCCCTCGTCA CTTGCAACTT GCTATTCGTG GAGATGAAGA ATTGGATTCT CTCATCAAGG CTACAATTGC TGGTGGTGGT 001120 001121 ATGTTAACTT CTAACATTTT AAAAAATTTC TTCAGAGGAA GGAATTTTTT GCTGCTTTTA ATTAGTTTTT CCAGGAGAGG 001200 001201 AAATTTAAGT ATATTTTCGA TGATGGAAGT ATGGTTGTAT CATGAAATTT GATTTATATG TATAACTCAA TGAATTTTTA 001280 001281 CTTCATACTT GAGCTGCATG TTTTTAAAGA TACCTTTCAA GTTGAACAGT ATACACTTTC TTGGTTTCAA ATACTGTGAT 001360 001361 TTTTTAAAAA ATCTTAAGTA GAATTAATTC CTGTCACTCT CCTAGGTGTC ATTCCACACA TCCACAAATC TCTGATTGGG 001440 001441 AAGAAAGGAC AACAGAAGAC TGTCTAAAGG ATGCCTGGAT TCCTTGTTAT CTCAGGACTC TAAATACTCT AACAGCTGTC 001520 001521 CAGTGTTGGT GATTCCAGTG GACTGTATCT CTGTGAAAAA CACAATTTTG CCTTTTTGTA ATTCTATTTG AGCAAGTTGG 001600 001601 AAGTTTAATT AGCTTTCCAA CCAACCAAAT TTCTGCATTC GAGTCTTAAC CATATTTAAG TGTTACTGTG GCTTCAAAGA 001680 001681 AGCTATTGAT TCTGAAGTAG TGGGTTTTGA TTGAGTCGAC TGTTTTTAAA AAACTGTTTG GATTTTAATT GTGATGCAGA 001760 001761 AGTTATAGTA ACAAACATTT GGTTTTGTAC AGACATTATT TCCACTCTGG TGGATAAGTT CAATAAAGGT CATATCCCAA 001840 001841 ACT |
Predicted Small Protein
Name | NONHSAT097544_smProtein_185:481 |
Length | 99 |
Molecular weight | 10551.3292 |
Aromaticity | 0.112244897959 |
Instability index | 55.7959183673 |
Isoelectric point | 9.80279541016 |
Runs | 16 |
Runs residual | 0.0242227732214 |
Runs probability | 0.033281443208 |
Amino acid sequence | MAGGKAGKDSGKAKTKAVSRSQRAGLQVSSCSCSLGVMMFFFAFPFLLFIALDGRFVYAW VMRCRDLGCPYDKYGGEESRVSMSGRVAAPVPLALARI |
Secondary structure | LLLLLLLLLLHHHHHHHHHHHHHLLLEEEELLLLHHHHHHHHHHHHHHHHHHLLLEEEEE EEEHHHLLLLLLLLLLLEEEEEELLEEELLLHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooo oooooooooooooooooooooooooooooooooooooo |