NONHSAT097288

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT097288

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1110 nt

Genomic location

chr4-:87834419..87835970

Exon number

3

Exons

87834419..87834986,87835118..87835541,87835853..87835970

Genome context

Sequence
000001 AATGTCACTG CACCAGTTTT TATTAGAGCC AATCACCTAT CGTGCCTGGA ACAGGGATCA TACCCAGATT GCCCTCAGTT 000080
000081 CCAATAATCA CCAAGTGCAC ATCTATAAGA AGAACGGAAG AAGAAGAACG GGAGCCGGGG GGTGAAAGCT CATGAACTCA 000160
000161 AGGAGCACAA CGGACATATC ACAGGTATTG ACTGGGCTCC CAAGAGCGAC CGCATCGTCA CTTGTGGGGC AGACCACAAT 000240
000241 GCCTATGTCT GGAGTCAGAA AGATGGTGTC TGTAAGCCAA CCCTGGTGAT CCTGAGAATT AACTGTGCAG CTACTTTTGT 000320
000321 GAAGTAGTCC CCACTAGGGA ACAAATTTGC TGTGGGAAGT GGAGCACGAT TCATTTCTGT TTGTTACTTT GAGTCTGAAA 000400
000401 ATGACTGGTG GGTGAGCAAG CACATTAAAA AGCCAATTCG CTCCACAGTC CTCAGCTTGG ATTGCCATCC CAACGACGTT 000480
000481 TTGCTGGCAG CAGGATCATG TGACTTCAAA TGCAGACTGT TTTCTGCCTA CATTAAAGAA GTaaaaaaaa GTGGATGAAA 000560
000561 AGCCAGTCAG TATGCACTGG GGCAGCAAGA TGCCCTTTGG GCAGCTGATG TCAGAGTTAG GTGGCAGTGG CACTGGTGGC 000640
000641 TGGGTCCACA GGGTCAGCTT CTCTGCCAGT GGGAGCCGCC TGGCCTGGGT CAGCCACAAC AGCACCATGT CTGTTGCTGA 000720
000721 TGCCTCAAAA AGTGTGCAGG TCTCACACAG AGTTCCTGCT GCTCCTAAGT GTTTCATTTG TCTCAGAGAA CAGAGTGGTG 000800
000801 GCTGCTGGCC ATGACTGCTG CCCAACGCTC TTTTCGATGA CCGAGGCTGC CTGACCTTCA TCTCCAGGTT GGACGTTCCA 000880
000881 AAACAGAGCA TCCAACGCAA CATGTCTGTC ATGAATGCTT TTGCAACATG GACAAGAGGG CCACGACTGA GGACCGCAAC 000960
000961 ACGGTGTTGG AGATGCTGCA CCCGAATAGC ATCACTCAAG TCTCTATTTA TGAGGTGGGC AAGCAAGATT GTCGCAAATT 001040
001041 TTGCACTACT GACATCGGTG GAGCCATGAC AATTTAGGAT TTCAAGACTC TCGAGTCTTC CATCCAGGGC
[back to top]

Predicted Small Protein

Name NONHSAT097288_smProtein_719:853
Length 45
Molecular weight 4826.5754
Aromaticity 0.0681818181818
Instability index 47.3340909091
Isoelectric point 5.98712158203
Runs 8
Runs residual 0.0187165775401
Runs probability 0.0324368486133
Amino acid sequence MPQKVCRSHTEFLLLLSVSFVSENRVVAAGHDCCPTLFSMTEAA
Secondary structure LLLHHHLLHHHHHHHEEEEEELLLEEEELLLLLLLLLLLLLLLL
PRMN -
PiMo -